SNHG20

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Annotated Information

Name

Approved symbol: SNHG20

Approved name: small nucleolar RNA host gene 20

HGNC ID: HGNC:33099

Previous symbols: C17orf86; NCRNA00338; LINC00338

Previous names: chromosome 17 open reading frame 86; non-protein coding RNA 338; long intergenic non-protein coding RNA 338; small nucleolar RNA host gene 20 (non-protein coding)

Alias symbols: PRO0872; FLJ25582; DKFZp686L05235; SCARNA16HG

RefSeq ID: NR_027058

Ensembl ID: ENSG00000234912

LncBook ID: HSALNT0245543

Chromosome

17q25.2

Disease

Hepatocellular Carcinoma

pubmed IDs

16373490

Sequence

>gi|224451087|ref|NR_027058.1| Homo sapiens small nucleolar RNA host gene 20 (SNHG20), long non-coding RNA

000001 AAGTTGCTGA CGGAGCTACT TCCGCCCAGG GGAGTGGGAA GTAAGTGGAG ACACGTGCTT TGGCCTGTTG GAGGGGAAAC 000080
000081 CCGCTCTCGC CTCCTGGTGG TCGCCGACTC GCAGTCCGCA GGATGACTCA GGGCAGCCCT GACCACAGTT CCGCCGCCAT 000160
000161 CGGCCCTAGC CTGCGGAATT GGGCTCGCCC CGGGACGATA ACAGAGCTCT GCCGGGGGCT GGAGGCACTG ACCGGGTGAC 000240
000241 CAGAGACCCA GAGACCAGAC CCCCTCCACG GCGCCCGGGA TTTCGGGGAC GGCTTCTCCC ATCGCAAGTT TCAACAGAAA 000320
000321 ATGAGAAATA TCCCCCGACG ATTGGCTGAA AACATGCAGC AACCACTATT TTCTTCCTGC CCCTCGTTGA TGAGAGCATT 000400
000401 CGAAGTGACC TCAGCAGGGC ATCCAGGTCA GTTTCTGGAA GACTTGTGTG TGTGATGAAT GAATATCTGG TTTTGTCTCT 000480
000481 GCTGGGCCTG TGTGCCTGGA AAGGAATTGT TTTGGCCTAG GATCATCCAG GTTTGTTTGG TTTAGTTCTT GACCACATAT 000560
000561 TTTTTGAATG GTGACTGCTT AAGACCCTGT TGTGTATGGC TATAAATAGA TACACGCCAA GGTGACCACA TACTCTGTGG 000640
000641 TTCCTGTGCC CGCCGGCCAT GTGTCTGAGT GTGTAGCCTC TCATCATCTA AAGGAACTTT GGCTGCAGAG GGGAGGCCTG 000720
000721 GTCCCATGGG AAGTTTTGGG AGCGCAGCAG CAGGTGGGTT CAAACGACCC AGCAAGTGCC TCCTTAGCAC TTAGAGGCGG 000800
000801 AGGCCACCAC GTTGTCCACG TGGGGTTTCT GATCCCAGCT CCCCACCAGC CTGCTGGACC TCGGGCAGGT CCCTCCCTGT 000880
000881 TTGTACCTCC ATTACTTCTT CAGTAAGATG GGGACACTGA AGATGACCAT GCCTCCCACC AGATTGGTGC TTTTTTTGTT 000960
000961 TTAATAAGGG ACAGAGTCTC ACTATGTTGC CTATAGGCTG GTCTCAAGCT CTTGGCCTCA GTTTTCCTGC CTCAGCCTTC 001040
001041 AAATATGCTG GGGTGACAGG CATGAGCCAC TGCACTGGCC CAGATTGGTA CATTTGAGGG TTAAATGAGC AAATCCTATA 001120
001121 AAGCACTCAG GAGAGGGCTG TGGGGTTTGG GCTGGGGCCT GGGAGCACTT TAGACGTGGT AGCTATGTTG TTGTCACCTT 001200
001201 TCTCCTCTTT CAAAGCATTT TTTGTTTGTT TGTTTTTGTT TTTGAGACAG AGTTTCGCTC TTGTGGCCCA GGCTGGAGTG 001280
001281 CGGTGGTGTG ACCTCGGCTC ACTGCATCCT CCGCCTCCCG GGTTCAAGTG ATGGGATTAC AGGTGCCTGC CACAACGCCC 001360
001361 AGCTAATTGT TTGTATTTTT AGTAGAGACG AGGTTTCACC ATGTTGGCCA GGCTGGTCTC GAACTCCTGA CCTCAGGTGA 001440
001441 TCCACCTGCC TTGGCCTCCC AAAGTGCTGG GATTACAGGT ATGAGCTACC GCGCCCGGCA CAAAGCATTT TCAGCTGTGA 001520
001521 AATTCCCTGG GGTGCTGCAG TAGAGGAAGG TTTGGGGTCT TGACGGGTGC TATTTGCCAC GGAAAGATGC CTTCCTGCTC 001600
001601 CCAGGGCAGG AGAGCCGAGG TAAGACTTAC TGTAGGCTGT CGTTTTTTTT GTTTGTTTTT TGTCTTTGCG ATGGAGTCTC 001680
001681 ACTCTGTCGC CAGGCTGGAG TGCAGTGGCA TGATCTTGGC TCACTGCAGA ACCTCCACCT CCCAGGTTCA AGCGATTCTC 001760
001761 CTGCCTCAGC CTCCCAAGTA ACTGGGATTA CAGGCACATG CCCCCACAAC CAGCTAATTT TTTATTTTTA GTAGAGACAG 001840
001841 GGTTTCACAT GTTGGCCAGG CTGGTCTTGA ACTCCTGACC TCAGGTGATC CGCCCGCCTC GGCCTCCCAA AGTGCTGGGA 001920
001921 TTACAGACAT GAGCCACTGC GCCCAGCCAG GCTGTTGTTT TTTTACCTCC TTGTTTGCAC AATTTGGGCC ACTCACAAGA 002000
002001 GTGTATACCC TGTGATAAAC AGTTACCTAC ATTCTCCTCT GCATGCTTGT CTTTAGAGGA AGGAAATGTA TTAATTGCCC 002080
002081 AAAGTAATAT ATTGTGTTAA GATGTGATAT ATACTGGGGA AAAAAAAAGT GTATATTGAC ATTTCTGGAA TAAACCACTT 002160
002161 TGATTCCCAA AAAAAAAAAA AAA

Predicted Small Protein

Name SNHG20_smProtein_1586:1780
Length 64
Molecular weight 7131.3835
Aromaticity 0.078125
Instability index 66.890625
Isoelectric point 9.13336181641
Runs 12
Runs residual 0.03890625
Runs probability 0.0389654360243
Amino acid sequence MPSCSQGRRAEVRLTVGCRFFCLFFVFAMESHSVARLECSGMILAHCRTSTSQVQAILLP
QPPK
Secondary structure LLLLLLLLEEEEEEEELLLEEEEEEEEEELLLLEEEEEELLLEEEELLLLLHHHHEEELL
LLLL
PRMN LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL
LLLL
PiMo iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooo
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Internal error - LncRNAWiki

Internal error

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[XfUvNOQzs0Oi4D7KvuLV9wAAAAw] 2019-12-14 18:51:34: Fatal exception of type "TypeError"

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