NONHSAT129210

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Name

PTCSC1 :papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding)

AK023948

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID

NONHSAT129210

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

2807 nt

Genomic location

chr8+:134067204..134070012

Exon number

1

Exons

134067204..134070012

Genome context

Sequence
000001 TTTGTCACTT CCAGTGCCCT GCCCAGCCCT ACAGAAAATA CGTGATTATT TAAGGGTGAA GAAGCCAAAG CTGGGAGAGT 000080
000081 TTTAGTCACC TATCTAGGGG AAAGTGTGAA GATTTCAAAG CCCAGGGTCC TTCACGGAGC CACACGGCTC TCCTTGGCAC 000160
000161 TTAATCTTCA AGCTCTCCTC AGCCCACACT TGACCCTTAA CAGGGGAGAC AAAGGCAGAC TCCAGGTAAG TTGTCAGGGT 000240
000241 TAGCATAAGC AGCTCAGGGC AACTGGTGGG TAGGGAGCTG TACAGCCCAG GGATTGCAGC CTCTTGTTTT GCATTTCCTG 000320
000321 GAGTCAAGGC TAAACTCATG GTCTCCTCAG GGGTCAAAGC AGGCCTGACT TTCAGTGTCA TCTTCAGGAC ACACACACGC 000400
000401 ACGCGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACAGGA TTATACATGC AACTAACCAA TCACACAGAG 000480
000481 CTGGACCATC TAGCCTGGTA GAAGGTCTGC CGAGTTCTGC GGGTCACCAT GAACCAGGCT TGTGAGCCCT CTTAGTCATA 000560
000561 TGTAAAGGGC TGTGTTTGAG ACCCGGTAGC CCACAAAGCT CTTTTCTGCC CAAGCCTTGG TTTTTCCGTA TGTTAGTGGG 000640
000641 GACAGATTGG AACTAAACAG ACCTTGAGTC TTTTCAGGGT CAGTCTCAAC TCTCTTAGAT GCTAGAGGGA TATAGGCAGG 000720
000721 GCTAGCACAG AACAGAAGCA AGAAATAGTC AAAATGAATA TTTTGGACTG CATAGACTCA GAATGTGCTT TACTTGGGCA 000800
000801 CCCAGGGCTT CTCAGACTTC AGTTGTTTTC ATTCCACCAT TCCCTTCCTC CCCCTCCTCA TCACCAGCAG CAGCAGCAGC 000880
000881 AGCAGCAGCA GCAGCAGCAG CAGCAGCAGC AGGGCGCACA GCTCTGGGGG GAATCAGGCA CTGGGCTGTG GTGGTACCGA 000960
000961 GGTTACCCCT GAAGTCCTCA CGCCTCCCTG TGAGGTTGAT AGATTGAAAC TACCTTATTT TGAGTATGAG GAAATAGAGG 001040
001041 CACAGTGAGG TCCAGAGACC GCCCAAGAGC ACACACCTAG GAAGCTGAGT GCCAGGTTTC AAAACCAGGT CTCCCTGGGC 001120
001121 AGGGCAGGGC ATGGCTGTGT TTGAACCACT CAGGTCTCCT TTGTCATAGT TGACAGCACT AGTTACTTGA TAATGTCTTT 001200
001201 TTAAAAATTA ATTTACTTAA AAAAACTTGA GTGCTATTCT AAGCAATGTG ACATCGTGGA TTTCTTGGGC TAGTTATATA 001280
001281 TTTTATGATG TTCATCAATG TACAATTATG TAAAAGTTGA ATGATCAAGT TCTGCCTAAG ACCATCTCAT GTACCAGCAG 001360
001361 CGAGGTTAGA TTCAAATAGA AAAAAGGGAT CTGGTCCAAG ATTTGACACG GATTCACTGT CTGTGGGACC CCTTGCTAGG 001440
001441 GCACTTGATC ATCTGGGTCA TTAAATCTGG GGGCCAGGCA CATTCTCATT CATTCGAGAC GAGCCCATCC TCTTCCAGAG 001520
001521 CATGGGGGCT TCTTGAAACC CTGTCCTTTC CAGGCACACA CTGAGGTGGG GAGAGGGACC CTGGAGTCAG ACCACCTGGC 001600
001601 TTTGAATCCC AGCTGTCTCC TCTGAGCTGT ATGGCCTAAG GCAAGTCATT TAAGCTTCTT GTACCTCAGA TTCTCCAACT 001680
001681 GCAAAACGGA GATGATAATA GGCAGAAGCC TCGTGGGGCT GTGAGAATCG AGTCTGCATA TGTAAAGCAC TGGGCACTGT 001760
001761 GTCTGGAGGC TGTGAGCACC AAGCGGCTCT AATCATTCCC GTTTTACAAA GGAGGACAGA GAGACTAAGG AGACAAACTC 001840
001841 TTTCTCATCT CTCGTTGTGT GTCAGTGCAG GGGCAGGACT AAAAGCTGGT CTGTGGTCTG CAAGCTTTAG GGGTTACAGA 001920
001921 GTCCCCAGGA ACTCCTAGGA AATTCAGCTG GCGGCTACCT TCCACCATCC CCAGGTTCTG ATTCGTGGGC CTGGGGTGGG 002000
002001 ACCCAGGAAT CTGCATTTCA GTTACTTCCC AGGGGATTCT GATGCAGGTG GTGCGAAGAC CACTTACTGA GAAGCTGCAA 002080
002081 GCTGGGTTTG AGAGGTCCCT ACCTCCTTCT TCCTTCCCCG AGCCCCACCC GCCCCCTTCT TTCCACTGGG CAACTATGTA 002160
002161 AACAGCATTA TTTCTACCCT TGCACGGACA GAAAGGGGTC TGTGCTGCTG CCTCTGTTGG TGCCTCTTCA GGTCAGGGTG 002240
002241 ATAAGAAGAG AAGGAACAAA GAGGGGAAAA AGATCACAGC AGAGAGACAG AGTGCTCATT TTAAGGTGGA AATATGCCAT 002320
002321 TTCCTGACCA CAGCGGGACT TCCCTAGGTT GTATTAAAAA ATCCTGTACT GCCCATGTCT GGTACAGAAG TATGTATAGA 002400
002401 ATTGTAGAGA AAATGAACAC TTTGGGATGA TTTGAAAGCA AATTACAGAA CTACCAGTTT CACCACTTTA AAACTTTTGG 002480
002481 GGAATGGCCA TTTAGATATA ACCTGGTGCA GTCAGGTAAC CCCAAACAGA GTTTTTAAAA GTTTCCACAC CCTTCTTTGC 002560
002561 TGGTGCCTGC CCTGCATCAT GCTGTCGCTG TGAGGAGGGA CTTGTTCCAG ATCTCTGGGG CAGCCCGAGT GTCTCACCTA 002640
002641 AAGTCACACA GCTTCCACGG AACATTACTG GAAGCTCAGT GAGGGCCTTC TGCCTCTGAA ACTTGCTCTA TTTCCCTCAA 002720
002721 GTCCTGCTTC CTTTTGTAGG TTTAAGACAT TAGTTCCTGA GAAATTGACT AATCAAGAAT ATTCTGGAAA TCTTAGTTTA 002800
002801 GCAAAAC
[back to top]

Predicted Small Protein

Name NONHSAT129210_smProtein_782:1006
Length 75
Molecular weight 7494.6628
Aromaticity 0.0675675675676
Instability index 59.0527027027
Isoelectric point 12.003112793
Runs 9
Runs residual 0.0210283454186
Runs probability 0.0501678148737
Amino acid sequence MCFTWAPRASQTSVVFIPPFPSSPSSSPAAAAAAAAAAAAAAAGRTALGGIRHWAVVVPR
LPLKSSRLPVRLID
Secondary structure LLLLLLLLLLLLEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLEEEEEEELL
LLLLLLLLLLEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL
LLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiii
iiiiiiiiiiiiii

Navigation menu

Internal error - LncRNAWiki

Internal error

Jump to: navigation, search
[Xetvu@NnV0HAU@j8oFbO9gAAAAk] 2019-12-07 09:24:14: Fatal exception of type "TypeError"

Navigation menu