CYP51A1-AS1

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Annotated Information

Approved Symbol

LINC00887

Approved Name

long intergenic non-protein coding RNA 887

Synonyms

linc-ATP13A4-8

Chromosome

3q29

RefSeq ID

NR_024480

OMIM ID

_

Ensembl ID

ENSG00000214145

pubmed IDs

26400545

Disease

  • renal cell carcinoma [1]

Labs working on this lncRNA

  • Renal Electrolyte and Hypertension Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania. [1]

References

  1. 1.0 1.1 Lin J, Zhang X, Xue C, Zhang H, Shashaty MG, Gosai SJ, et al. The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury[J]. American journal of physiology Renal physiology. 2015,309(11):F901-13.

Sequence

>gi|213512111|ref|NR_024480.1| Homo sapiens long intergenic non-protein coding RNA 887 (LINC00887), long non-coding RNA

000001 ATTCATTTTC TGCTCAGACA CCGTTGCTTG CAAAATTCCA CCCAGAAGAT AAGGGAGGGA GTATCGCTGC AGCGTCCTGC 000080
000081 TCTGTGCCTG GTTATATTAC TGGATCCTTG TGTTGCAGCC CTAAGATAGA AGGATTGTCT CCATTTCACA GATGAGAGAG 000160
000161 AACTGATGCG CAGGAGGCTG AAATTGTCTG AAGTCACACA GCAGCCTCCT CTTAAACATG ACAAAGAATC CAAGGACTTG 000240
000241 TGCTGGGGCT GTCAGCTGCT ATTCTGGTGC CCTGGGGACG AAGAAGGGAT CTGGAGGGAA GACTGTCACC CTCTTGCGAA 000320
000321 TGTTTCCAAG AAGCAGCTCA GCATGGGAGA GAAAAGGGGA GATCCCAGTT CCAGGAACAC CTGGCCAGTG TTTCACCTGT 000400
000401 TTATCGGAGT TGACAGGACC AGCCAGCCCT TTCCCACCTC TCCCCATCAT GATGGATGGG AGCCTGGCCT TTGAGATTCC 000480
000481 TGCGAAGGAA TGACAAAGAA CATCAAGGCT CAATCCTTGG AACTCTCCAT CACTCATCTT TAAATTAGAC TTCTCTGCTG 000560
000561 ACTCTCAGAG TTGTGTATGC TGAGAATCCA CTGCCTCTAA GACATCCTGC TTGGCAGGTA ACAGACATTT CATCCTGAGC 000640
000641 TGAGCTCCTG CCCACCCCGC CCACACACAG ACCCCTTCTT GCCCACAGAT TTCCCATCTC AGCCAATGGC GAGTCCAAAA 000720
000721 ATCCTTTGTG TCCCCTTTGA TTCTTAGGTT CCTATCTCCC TTCGACTGAG GCATCGTTTC CAAATCAGAC ACTTCTCGTC 000800
000801 ACCACTATTG CCCTCCCCTT GTCCAACCCA CCTTTGGCTC TTGGCTGGAG TCCGGTGAGT CTCCTAGCTG GCTCTCCCTG 000880
000881 TTCTCGTCAT TTCCCAGTAA GTTCCAACCC TGCCTTCAGA CTCTTCTGCA CACAGCTTCC AGAGTAATCC TTTCAAAAAG 000960
000961 TAAGTCAGAT CCCATCTTTT CCCTCCCGTC TCACTCTGTC AGCCACATTC ATTCCAAAGG ACCATGTGGT CCATGTCCCT 001040
001041 GTTCTCTCTG GTTCTCTCAC TGCTCTCCTC TGTGCTTACT CTCTCCTGCC TCACAATGTT TGCACTTACT GTTTCTTCTG 001120
001121 CTTGGAACTC TTTCCCTCCA AGACCTTTTT TTTTTGAGAC GGAGTCTCGC TCTGTCGCCC AGGCTGGAGC GCAGTGGTGC 001200
001201 AATCTCTGCT CACTGCAAGC TCTGCCTCCC AGGTTCACGT CATTCTCCTG CCTCAGCCTC CCGAGTAGCT GGGACTACAC 001280
001281 GCACCAGCCA CCATACCCAG CTCATTTTTT TTGTATTTTC AGTAGAGACG GGGTTTCACC ATGTTGGCCA GGATGGTCTT 001360
001361 GATCTCCTGA CCTCGTGATC CGCCCGCCTC GGCCTCCCTA AGCGCTGGGA TTACAGGTGT GAACCACCGC GCCCGGCCTC 001440
001441 CCTCCAAGAT CTTTACTCAC GTTGTCACCT TAGTGACGGC TCCCTCCCTA ACCATCCTAT TTAAAATTGC AGCCCGTTCA 001520
001521 ACACCCATTC CTCCTTCTCC ATCCTTGCTC TGCTTCCTCC CTTTGACCTG TCACTCTTTA ATCCAGTGGC ATTCTGATTC 001600
001601 AATGGTGACT GGGAGCAGGA CCTAAGGAGG TGCGTCATCT GTAGAGAATT TGAAAATAAT CGTGAAATAA ACTCAAAGTG 001680
001681 GGTTTGCTCT TTATGAGCCC CGCACACCAG CAATTCTAAA TTCTGTTATC AATATACTTT CCTGCCAGGG TGGGCCGCCC 001760
001761 CCACCGATTC TCCTCTATCT TAATACACTA TGTGTTTCCC TTGTTTATTT TGCTTATTGT TCATTTCCAT GCACTAGAAT 001840
001841 ATAAGCTCCG CGAGGGCAGT ATATTTTGTC TGTTTTGTTC ACCACTGTGT CCCTCGTGTC TGCCACATGG TGTGTGCTCA 001920
001921 GTAAGCTTTA GCTGAATGAA TGAAGTGGTG GATGTCGACG TTCCCTTAGT TGGGGGTTAT CAGGAGGGCT TCCTGGATGA 002000
002001 ATTGGTGTCT ATATTGCCTG TCCTTAAAGA GGAGGAAGGT GCTCTAGGCA GAAGGAACAG CAGGTACAAA AGCAACTTGA 002080
002081 CTGTCAGGGT CATTAGCTAA GAGTAGGAGT CAGAGGGATG AGTGGGTGTC GTTCACCAGA ATTTACCCTT CAAAATGTCA 002160
002161 GTGCTTAGTA AATGAATGTG TTCCTTTATT ACTAGTTGTT GGAGGGTCCT TGTTGACATC TTGCAGAGGT CTGGCTGTCA 002240
002241 CTTTTAATCA GAATGGCTAT TCCCCACTCC TGCTGAAGAG CTCCAGGCCT GGCGGGGGTG GGCTGGCGGG CTGTGGTGGT 002320
002321 GGTAAGGGCT GTCCCCCAGC ACACTGTTAG AACTTTACTT ATCCTCTTGC TTGAAGTGTG GGAGCTGGAG ACCATTCAGG 002400
002401 AAGCTGTGGT TACAGTCCCA GACAGGGTCC CTAAAAGCAA GGAGCCATTC CCAATGCTTC CTCCTTAGGG AAGCCTTCCC 002480
002481 TACTTTCTCT TCCCTCTTCT GGGCAGAGTT TGTACCTTCC TCCTTTTTGC TCTCTGTTTA TTTCTTTAAT TTAACACTTA 002560
002561 ACAACATAAT ACCATCTTTA TTTGTTCCAT GTTTGTATCT TCTACTGAAT GTGGCTTCAA GAACAGAAAG CACAGAACGT 002640
002641 GGCACGTTGG AGGAAATCAG TAAGTGTTTG CTAAAGGTCC AACAATGAAA CAGAACAGAT ATATCCAGTG CTATGCCGCG 002720
002721 TCAAAAGAGT ATGAGAGGTA TTGTGGTGAT GCTTTTGAAT GCTAATCAGA ATAAGGAGGG TGACTAGTCC ATAGTTATAT 002800
002801 AGAATATAGG ATATACAGAA TATACCTTTT TCTGTAACGG GATGTGTCAC TTAACTTTGT TCCTTAAAGC TCCAGAAGCC 002880
002881 CAAGGTCACC CACAATGATT CAAGTATTAT CAATGTTGAG AGCCTGTAAA AGCATCAAGT ATATTATAGT TTCCAAAAAA 002960
002961 TTGTGAATTA GACTGAAAAC CAGCATTTAA AAAATAAAGT GATGTTGACT TAAAAAAAAA A

Predicted Small Protein

Name CYP51A1-AS1_smProtein_1202:1384
Length 60
Molecular weight 6728.8173
Aromaticity 0.0333333333333
Instability index 54.7616666667
Isoelectric point 12.2568969727
Runs 11
Runs residual 0.0335992907801
Runs probability 0.0404522169228
Amino acid sequence MRSGKMRENLGVAYRAAEVRHTLRFTCGLPRRLRLLRRTGRGRARLSPAIARTSAGAAQH
Secondary structure LLLLHHHHLLLHHHHHHHHHHHHHHLLLLHHHHHHHHHLLLLEEELLHHHHHLLLLLLLL
PRMN -
PiMo -

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Internal error - LncRNAWiki

Internal error

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[XemEfu439xgDUBrPClgp9gAAAAA] 2019-12-05 22:28:16: Fatal exception of type "TypeError"

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