PCAT29
Revision as of 05:24, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== PCAT29 ===Approved Name=== prostate cancer associated transcript 29 (non-protein coding) ===Previous Symbols=== _ ===Synonyms==...")
Contents
Annotated Information
Approved Symbol
PCAT29
Approved Name
prostate cancer associated transcript 29 (non-protein coding)
Previous Symbols
_
Synonyms
_
Chromosome
15q23
RefSeq ID
NR_126437
OMIM ID
616273
Ensembl ID
ENSG00000259641
pubmed IDs
25030374
Sequence
>gi|703491616|ref|NR_126437.1| Homo sapiens prostate cancer associated transcript 29 (non-protein coding) (PCAT29), transcript variant 1, long non-coding RNA
000001 GTTATTATTA CCTGAGACCC TGAAAGGAAG CACTAAAGAA ATGAAGACAG AGGAATACCA GGAGAGAAAG GAGGTCCAGT 000080
000081 TAGACCTAAA GGTGGGCAAG AAGAAGAAGA AGAGAGTGCT TTGCCTGTAG CATTTGAGGC AGGCGGCTGG GACACTGAAT 000160
000161 GAAGAGCCTG GGGGAGGCAG GTTCAGCATG CCACCGTTTC CTGGTCATGA AGATGCCAGC TCCAGCTCCA AGCAGAGGAG 000240
000241 GCTGGCCTTT GCCCCACGGC CTTGGCTGCA GCACCATCAC ATGCCTCCAC GCCTCTCCAT CTCCTCATGA AGATCTCTCT 000320
000321 CCAGATAGAG ACCATTTCCT CCCTAGAGGA ATCCTTGTAC TATCCGTAGG AGGCACCTGT TGAATTCAGG CATCGGCATG 000400
000401 TGACTTGATT TGGTCAATGA AATGTGAGAG AAGTGACATC CACTTTGAGG CAGGCACTTT CCGAATGCCA TCAAGCTGAG 000480
000481 ATGTGAAGCG GAAGTGAGGC AGAGGCTCCC TTCCTTTTGT TTGGCGCAGT TTTCTGTGAG AGAGCAGAGG TGGGAGATGA 000560
000561 GGGGACCTCT GCCCCAGTGT TTCTGCATCC AAGCTCCAGC CTTGTTGAAG GTTGCCCCGA CGGCCACTCT CCATACTGCT 000640
000641 GCCAGAAGAA CCTTGAAATA TCGCTCTTTT TAATTAAAAA GCAAAACTCT TCAA
000081 TAGACCTAAA GGTGGGCAAG AAGAAGAAGA AGAGAGTGCT TTGCCTGTAG CATTTGAGGC AGGCGGCTGG GACACTGAAT 000160
000161 GAAGAGCCTG GGGGAGGCAG GTTCAGCATG CCACCGTTTC CTGGTCATGA AGATGCCAGC TCCAGCTCCA AGCAGAGGAG 000240
000241 GCTGGCCTTT GCCCCACGGC CTTGGCTGCA GCACCATCAC ATGCCTCCAC GCCTCTCCAT CTCCTCATGA AGATCTCTCT 000320
000321 CCAGATAGAG ACCATTTCCT CCCTAGAGGA ATCCTTGTAC TATCCGTAGG AGGCACCTGT TGAATTCAGG CATCGGCATG 000400
000401 TGACTTGATT TGGTCAATGA AATGTGAGAG AAGTGACATC CACTTTGAGG CAGGCACTTT CCGAATGCCA TCAAGCTGAG 000480
000481 ATGTGAAGCG GAAGTGAGGC AGAGGCTCCC TTCCTTTTGT TTGGCGCAGT TTTCTGTGAG AGAGCAGAGG TGGGAGATGA 000560
000561 GGGGACCTCT GCCCCAGTGT TTCTGCATCC AAGCTCCAGC CTTGTTGAAG GTTGCCCCGA CGGCCACTCT CCATACTGCT 000640
000641 GCCAGAAGAA CCTTGAAATA TCGCTCTTTT TAATTAAAAA GCAAAACTCT TCAA
Predicted Small Protein
| Name | PCAT29_smProtein_158:382 |
| Length | 74 |
| Molecular weight | 7759.9512 |
| Aromaticity | 0.0405405405405 |
| Instability index | 71.9851351351 |
| Isoelectric point | 7.76202392578 |
| Runs | 10 |
| Runs residual | 0.00751483190508 |
| Runs probability | 0.0421568627452 |
| Amino acid sequence | MKSLGEAGSACHRFLVMKMPAPAPSRGGWPLPHGLGCSTITCLHASPSPHEDLSPDRDHF LPRGILVLSVGGTC |
| Secondary structure | LLLHHHLLHHHHHEEEEELLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLL LLLLEEEEEELLLL |
| PRMN | - |
| PiMo | - |
