Difference between revisions of "NONHSAT113225"

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[[Category:Intergenic]]
 
[[Category:Intergenic]]
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{{lncrnadb|
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tID = NONHSAT113225|
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ltID = KRASP1|
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ann = <tab class=wikitable sep=tab head=top>
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Section Description
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ID KRASP1
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Characteristics Processed pseudogene of KRAS oncogene on 6p12-p11 [http://www.ncbi.nlm.nih.gov/pubmed/6308466 (McGrath (1983))].
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Function Probable competing endogenous RNA (ceRNA). KRASP1 is hypothesised to act as a decoy for miRNAs targeting KRAS, similar to how PTENP1 acts a decoy for PTEN [http://www.ncbi.nlm.nih.gov/pubmed/20577206 (Poliseno (2010))]. Expression of the KRASP1 3'UTR sequence lead to de-repression of KRAS mRNA levels and increased cellular proliferation [http://www.ncbi.nlm.nih.gov/pubmed/20577206 (Poliseno (2010))]. 
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Conservation Pseudogene sequence at this locus only present in some primates.
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Name KRAS Pseudogene 1
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</tab>|
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}}

Revision as of 11:55, 6 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT113225

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

865 nt

Genomic location

chr6+:54635169..54636037

Exon number

2

Exons

54635169..54635601,54635608..54636037

Genome context

Sequence
000001 CTGCATCATA AATTCCTAAG GAATGGAATG AGCTTTGACT GCCTTACCTT GAGAATAAGC ATATTCACGT AAAGTATATA 000080
000081 AGACAAATAC TGGTTTAGAT GAAGCTCGGC CAGTACTCCC GGCCTCCGCC ATTTCGGACT GGGAGCTCCG TGGCGCAGGC 000160
000161 ACTGAAGGCG GCGGCAGGGC CAGAGGCTCA GCGGCTCCCA GACCTGCTGA AAATGACTGA ATATAAACTT GGCGGTAGTT 000240
000241 GGAGCTGGTA GCGTAAGCAA AAGTGTCTTG ACGATACAGC TAATTCAGAA TCATTTTGTG GACCAATATG ATCCAACAAT 000320
000321 AGAGAATTCC TACAGGAAGC AAGTAGTAAT TGATGGAGAA ACCTGTCTCT TGGATATTCT TGACACAACA GGTCAAGAAG 000400
000401 AGTACAATGC AATGAGGACC AGTACATGAG GACTGGGGGG GGGGGGGGCT TTCTTTGTGT ATTTGCCATA AATAATATTA 000480
000481 AATCATTTGA AGATATGCAC AATTATAGAA AACAAATTAA AAGATTTAAG GACTCTGAAG ATGTGCCTAT GGTCCTAGTA 000560
000561 GGAAATAAAT GTGATTTGCC TTCTAGAACA GTAGACACAA AAGGCTCAGG ACTTAGCAAG GAGTTAGGGA ATTCCCTTTA 000640
000641 TTGAAACCAG CAAAGACAGG GTGTTAATGA TGCCTTCTAT ACATTAGTTT GAGAAATAAA AGATGAGCAA AGATGGTAAG 000720
000721 AAGAAGAAAA GTCAATGACA AAGTGTGTAA TTATGTAAAT ACAATTAGTA CTTTTTTCTT AAGGCATAGC TTAAGTAAAA 000800
000801 CTGGTAATTT TTATACATTA CACTAAACTA TTAGCATTGT TTTAGCATTA CCTAATTTTT TTCCT
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Annotation (From lncRNAdb)

[NONHSAT113225]
Section Description
ID KRASP1
Characteristics Processed pseudogene of KRAS oncogene on 6p12-p11 (McGrath (1983)).
Function Probable competing endogenous RNA (ceRNA). KRASP1 is hypothesised to act as a decoy for miRNAs targeting KRAS, similar to how PTENP1 acts a decoy for PTEN (Poliseno (2010)). Expression of the KRASP1 3'UTR sequence lead to de-repression of KRAS mRNA levels and increased cellular proliferation (Poliseno (2010)).
Conservation Pseudogene sequence at this locus only present in some primates.
Name KRAS Pseudogene 1

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