Difference between revisions of "NONHSAT040032"

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==Annotated Information==
 
==Annotated Information==
===Transcriptomic Nomeclature===
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===Name===
Please input transcriptomic nomeclature information here.
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Dio3os
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===Characteristics===
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Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Also overlaps a provisional microRNA miR1247.
  
 
===Function===
 
===Function===
 
Please input function information here.
 
Please input function information here.
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 +
===Expression===
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Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only),  kidney and lung (expressed in both) [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))]. Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 [http://www.ncbi.nlm.nih.gov/pubmed/16935842 (Kester (2006))]. Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes [http://www.ncbi.nlm.nih.gov/pubmed/17510246 (Hernandez (2007))]. Not imprinted in mouse [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))].
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===Conservation===
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Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))].
 +
 +
===Misc===
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Please input misc information here.
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 +
===Transcriptomic Nomeclature===
 +
Please input transcriptomic nomeclature information here.
  
 
===Regulation===
 
===Regulation===
 
Please input regulation information here.
 
Please input regulation information here.
 
===Expression===
 
Please input expression information here.
 
  
 
===Allelic Information and Variation===
 
===Allelic Information and Variation===
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}}
 
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[[Category:Intergenic]]
 
[[Category:Intergenic]]
 
{{lncrnadb|
 
tID = NONHSAT040032|
 
ltID = Dio3os|
 
ann = <tab class=wikitable sep=tab head=top>
 
Section Description
 
ID Dio3os
 
Characteristics Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Also overlaps a provisional microRNA miR1247.
 
Expression Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only),  kidney and lung (expressed in both) [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))]. Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 [http://www.ncbi.nlm.nih.gov/pubmed/16935842 (Kester (2006))]. Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes [http://www.ncbi.nlm.nih.gov/pubmed/17510246 (Hernandez (2007))]. Not imprinted in mouse [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))].
 
Conservation Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))].
 
</tab>|
 
}}
 

Revision as of 02:16, 11 October 2014

Please input one-sentence summary here.

Annotated Information

Name

Dio3os

Characteristics

Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus (Hernandez (2004)). A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 (Hernandez (2004)). Also overlaps a provisional microRNA miR1247.

Function

Please input function information here.

Expression

Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung (Hernandez (2004)). Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only), kidney and lung (expressed in both) (Tierling (2006)). Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 (Kester (2006)). Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes (Hernandez (2007)). Not imprinted in mouse (Tierling (2006)).

Conservation

Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os (Hernandez (2004)).

Misc

Please input misc information here.

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Regulation

Please input regulation information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT040032

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3454 nt

Genomic location

chr14-:102018560..102022013

Exon number

1

Exons

102018560..102022013

Genome context

Sequence
000001 AGTGGATTTC AGGATTCCTC TAAGAAGCTT TGGAATGCCA GAAGATACCA CAAGTGAGAA GAAAAAATAA AACAAGAGGA 000080
000081 AGGATATACT TCCCATAAGG GGACAAAGTA CAGCCGCAGT GTCCTCCGCT TGGGCCATGG AACAGCTGCA GGTTTTGCCC 000160
000161 TGATTACCCT GGTGGTAAAG TCTGATTGGC TATGATTCCC GGTGTCCAGA AGATAAACAC GGGCGGTGCA GCGGAGCCAC 000240
000241 ACGCATGCCT GTGCATGGCC ACGCCAGGTC GGAAACCCAG CCCCTCTGCT TGGGAGGCAC GCAGGGCTCT GGCTGAAGCC 000320
000321 TGAAGCTTGG GATCCTCAGA GCACAGATGT CCCAGGGTTG TGTGAAGTTA GTGAGACGAG GTGTACGGAG AGAGCTCGGA 000400
000401 GAGGAGAGGG AGTCTCGATT GCTGTGGCTG TGGCTCGGAG ATGCCTGCAA GAGGTGACGG TGATGTGCGT GGTGGTGTGT 000480
000481 TCACTGATGA TGCTACACTG CAGGCCCAGG GCTGTGTTGT GGTGGCAGGT GTCCTCCTGG ACCGTTTGAC CTTTAGGGAG 000560
000561 GCCTCCTCCA CTCAAGCACT GGTCCTGGAG GGGCTCTGGG CACACAAGGA GTCAGGCATG TTTTTGCCCC CGAGGAGCCC 000640
000641 CCCAGCCTGG CAGGGCCCAG GGGCAGGGCA GGGTGGGGCG GGGTGGGATG GGGGTGCTCC AGGAGGTAGC AGGGACACTT 000720
000721 GGTAAGTGGG GCCAAATTGG GAGGCATCTC AGGAGGTGGC CATGGGCAGA GGGACAGCCT TCCAGTTCTT TGCCTCTCCC 000800
000801 CTTTGAAGCC CGGCGCCTGG CAACAGACCT GTGGTAGCTG CACCTGCCTG GGTAGGAGAC TGTGGGCTCT TTTCTCGTAG 000880
000881 GGGGACAAGA GTCATTTGCA GGACCTTCTG AGCAGGTGGG GGACAGCGAA GGACAAGAGG AGGCTGTGCC TGTGCGGCTG 000960
000961 TGTCCCGGCA CAGGTGCCGC TTCATGCCCA CGCCACCACA TCCTCACTGG GTGGCTTCGG GCAAGTTACC TGAACTCTGC 001040
001041 GCCTCCATCT CGTCTTCTGT AAAATGGGTG GCACATCCGA GCCCACCTCC TAGGGAGGGT GTTGTGAGGA CAGGTGGGGG 001120
001121 CACGTCCGCA CAGCCCCTAG AATAGTGCCC AGGGCACCAG AGTGCTCTGT AGGGAAATAG TAGTGGCTGG CACTGAGCCC 001200
001201 CCAACATAAG CCAGCACCGT GGGCCAGAGC CACGACTCCT GCTTCTGGGC ACTTCACAAG CTATGGCCAG GGGCCACCAC 001280
001281 CTTTGGCCAC TCCTTTCCCA CAGAATTCCT ACCAGGGCCC TGCCAGGTCA ACAAGTCACA GGGCTTCCCC ATCACAGAAG 001360
001361 CCCAGCTCTG TGACACCTCT TGGTCCCAAG CACGTTCCTA TCCCCCATTC ATGTGTTTTG TTAGGACCCT TTAGGGTTGC 001440
001441 ACATGGCAGA AACTTAATCC ACACCAACTT CAGCGAAGAA GGAATGTACT GGCTCCAGTC AGTGAAAAGT CCAGGAGGAG 001520
001521 CCATGCCTTC AGGCACGGCT GCATCCAGGC ACTCAACAGG TGTATCCAGG CACTCAACAG GTGCAGCCAA CACCTTGCCC 001600
001601 CGCAGGCTGT CAGCTCCTGC CTTCTGCTGC GTCCACGTCA CTGTAGGTGG ATTTCTCTGC ACATGGGTGA GATGGCCCCA 001680
001681 GAAGCTCTGG CTCATGGAGT CCTTGTAGCA CCTGTCCTGG CCATCCCCAG ATGAGAAAGC ATCATTTCCC ATGGCAGAAA 001760
001761 TCTGGTGGAA ACAGGAGGGA GGGGGTCGGC TCTCTTTGGT CGGATCTGGG TCTCGTGCCC ATCTCTGGGA GAGAAAAGTC 001840
001841 CCCATTCACA GAAACTGAGC AGATCCTGGA TTGGATGGGG AAGGAGAGAT GCTGGCAGAT ACACACACAT TCACTGCACT 001920
001921 CCCTGCAAGG ATAGTGACAA TAGTAGAAGC TGCTCTTTCT TGAGAAGTTA TGACGTGTGC CAGAAAATTC TACCTTTTAA 002000
002001 GGATATAGAG AGGCTTTTAT CATCCCCATT TTACAGATGA CAAAACTGAG GCTCAGAGAG GTGAAGTGAT TTGCCTATGG 002080
002081 ATGCATAGCT AAGGTCTGAC CCCACAACTC ACACTCACAA GTTAGCAAGA GGTGTTTCAC CAGGGTAGTC TGGGGGCAGA 002160
002161 AGGAGCCTGC CTGGTGAGGG AAGGGAGGTG GAGAGGTGGG GAGAGGGGAG GCCAAGAGGA GGGGACACCA GGACCTGGCC 002240
002241 TCTGGCTTGC ACAATGGGGA GGGAACCCTG GAGAAGAGGA GGTTTATGGG GGAGGCTGCT GAGTTTTTTG GGCACATATG 002320
002321 CTAAGTTGGA GGTGCCCATG GTCCTCAGGA GATGTTCGGG ATTTGGGGGT CAGAGGCATG AGCCTCGGCA TCCTGGGAAT 002400
002401 CATGGCTGTT TGCTTTGCTT TGGGAATTTC ACAGTGGTGG GGGGAAGGCG GCTGCTGACA GGAAGCACTT CCCATTTGGT 002480
002481 GGAGAAGGCA GCCAGAACCT GCATGGCAGA AGCTGCGGCC TGGGCCTGTG ACAGTGTCTA CAACTGTGGC CACAGGTTCA 002560
002561 AGGCCCTTGT AGTTGGCAGA CACAGGGCCT GAAGTTCTCT GGCCGTTGTT TTAGGGCAAA CACCTTGAGA ATGGCATTTC 002640
002641 CAAGGCCCTT GGGCTGTGCC AGGGCACCAA CGCCAGTCGA GGACCACGCC TTTCTGAGGG ATGCTTGGAA TCTCACAGAC 002720
002721 AGGGGTTCAC ATTCCGACTC TGCTTCCTAG AGGCTATGTG GCCTTGGGCG TGTCTGGAAC CTCTCTGGGC CACAGTTTGC 002800
002801 TTATCTGTGA AAGAGTCATG GTAGCCTCTC CTTATGGGTT TATGGGGAGC TTCGGATATG GAGGGTGGGG CAGCACACAG 002880
002881 GGCTCAAGCT GCAGCTCTTA GTTACCTGCT TTTCCTTTGC AGGTGTCCTA CGGGCCTGAT GGAAAGGTGG CAGGCGAAAT 002960
002961 GCACCTGGCC TCAGCGTCAG GGGCTGTGAA TGCAGTAGCA CTTGTAGCTA TGAGGTCAGA GTGGACTAGG ATGGTCCTTC 003040
003041 CACCAAGAAG CCTGGGCCTT CCTGCTCTTC GTTGTCCAGC TGCAGAAACT GATCTCATCC CTCAGGGCTT GGCACAACTG 003120
003121 CCCCTTCCTC CTCACATTCC CAAATATACC TACCCCTCCC CAACTCAATC CTCCTCACCA GACTGTGGCT CCAGGATGAC 003200
003201 AGGGCAGAGT TGGACTCACC TGTGTCTGCC AGGCCAGCTC ACCGTGGGGG CAGGTCCCAA GAGGCCTCTG GATTTGGACC 003280
003281 AACTTCCAGT GTGACCTTGA ACAAGGCCTT CGCCTCCCTC AGCCTCCGTT GCATGAGGGG TTGTGCTGGC ACATCTCAGA 003360
003361 GCAGGTAGCG CTACCTGGTG AGTTGAGGGC TCTGTCCATC ATCTTTGTCA CTGTAATGCT GGGTAACAAA TAAACACGAA 003440
003441 ACAATGAGTG CTCG
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Predicted Small Protein

Name NONHSAT040032_smProtein_440:724
Length 95
Molecular weight 9634.6073
Aromaticity 0.0744680851064
Instability index 45.3159574468
Isoelectric point 4.79168701172
Runs 13
Runs residual 0.00948196114709
Runs probability 0.0325914149444
Amino acid sequence MPARGDGDVRGGVFTDDATLQAQGCVVVAGVLLDRLTFREASSTQALVLEGLWAHKESGM
FLPPRSPPAWQGPGAGQGGAGWDGGAPGGSRDTW
Secondary structure LLLLLLLLLLLLEELLHHHLLLLLEEEEEEEEELEEEEEELLHHHHHHHHHHHHHHHLLL
EELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -