Difference between revisions of "NONHSAT040032"
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==Annotated Information== | ==Annotated Information== | ||
− | === | + | ===Name=== |
− | + | Dio3os | |
+ | |||
+ | ===Characteristics=== | ||
+ | Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Also overlaps a provisional microRNA miR1247. | ||
===Function=== | ===Function=== | ||
Please input function information here. | Please input function information here. | ||
+ | |||
+ | ===Expression=== | ||
+ | Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only), kidney and lung (expressed in both) [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))]. Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 [http://www.ncbi.nlm.nih.gov/pubmed/16935842 (Kester (2006))]. Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes [http://www.ncbi.nlm.nih.gov/pubmed/17510246 (Hernandez (2007))]. Not imprinted in mouse [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))]. | ||
+ | |||
+ | ===Conservation=== | ||
+ | Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. | ||
+ | |||
+ | ===Misc=== | ||
+ | Please input misc information here. | ||
+ | |||
+ | ===Transcriptomic Nomeclature=== | ||
+ | Please input transcriptomic nomeclature information here. | ||
===Regulation=== | ===Regulation=== | ||
Please input regulation information here. | Please input regulation information here. | ||
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===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
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[[Category:Intergenic]] | [[Category:Intergenic]] | ||
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Revision as of 02:16, 11 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Name
Dio3os
Characteristics
Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus (Hernandez (2004)). A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 (Hernandez (2004)). Also overlaps a provisional microRNA miR1247.
Function
Please input function information here.
Expression
Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung (Hernandez (2004)). Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only), kidney and lung (expressed in both) (Tierling (2006)). Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 (Kester (2006)). Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes (Hernandez (2007)). Not imprinted in mouse (Tierling (2006)).
Conservation
Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os (Hernandez (2004)).
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
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Basic Information
Transcript ID |
NONHSAT040032 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3454 nt |
Genomic location |
chr14-:102018560..102022013 |
Exon number |
1 |
Exons |
102018560..102022013 |
Genome context |
|
Sequence |
000001 AGTGGATTTC AGGATTCCTC TAAGAAGCTT TGGAATGCCA GAAGATACCA CAAGTGAGAA GAAAAAATAA AACAAGAGGA 000080
000081 AGGATATACT TCCCATAAGG GGACAAAGTA CAGCCGCAGT GTCCTCCGCT TGGGCCATGG AACAGCTGCA GGTTTTGCCC 000160 000161 TGATTACCCT GGTGGTAAAG TCTGATTGGC TATGATTCCC GGTGTCCAGA AGATAAACAC GGGCGGTGCA GCGGAGCCAC 000240 000241 ACGCATGCCT GTGCATGGCC ACGCCAGGTC GGAAACCCAG CCCCTCTGCT TGGGAGGCAC GCAGGGCTCT GGCTGAAGCC 000320 000321 TGAAGCTTGG GATCCTCAGA GCACAGATGT CCCAGGGTTG TGTGAAGTTA GTGAGACGAG GTGTACGGAG AGAGCTCGGA 000400 000401 GAGGAGAGGG AGTCTCGATT GCTGTGGCTG TGGCTCGGAG ATGCCTGCAA GAGGTGACGG TGATGTGCGT GGTGGTGTGT 000480 000481 TCACTGATGA TGCTACACTG CAGGCCCAGG GCTGTGTTGT GGTGGCAGGT GTCCTCCTGG ACCGTTTGAC CTTTAGGGAG 000560 000561 GCCTCCTCCA CTCAAGCACT GGTCCTGGAG GGGCTCTGGG CACACAAGGA GTCAGGCATG TTTTTGCCCC CGAGGAGCCC 000640 000641 CCCAGCCTGG CAGGGCCCAG GGGCAGGGCA GGGTGGGGCG GGGTGGGATG GGGGTGCTCC AGGAGGTAGC AGGGACACTT 000720 000721 GGTAAGTGGG GCCAAATTGG GAGGCATCTC AGGAGGTGGC CATGGGCAGA GGGACAGCCT TCCAGTTCTT TGCCTCTCCC 000800 000801 CTTTGAAGCC CGGCGCCTGG CAACAGACCT GTGGTAGCTG CACCTGCCTG GGTAGGAGAC TGTGGGCTCT TTTCTCGTAG 000880 000881 GGGGACAAGA GTCATTTGCA GGACCTTCTG AGCAGGTGGG GGACAGCGAA GGACAAGAGG AGGCTGTGCC TGTGCGGCTG 000960 000961 TGTCCCGGCA CAGGTGCCGC TTCATGCCCA CGCCACCACA TCCTCACTGG GTGGCTTCGG GCAAGTTACC TGAACTCTGC 001040 001041 GCCTCCATCT CGTCTTCTGT AAAATGGGTG GCACATCCGA GCCCACCTCC TAGGGAGGGT GTTGTGAGGA CAGGTGGGGG 001120 001121 CACGTCCGCA CAGCCCCTAG AATAGTGCCC AGGGCACCAG AGTGCTCTGT AGGGAAATAG TAGTGGCTGG CACTGAGCCC 001200 001201 CCAACATAAG CCAGCACCGT GGGCCAGAGC CACGACTCCT GCTTCTGGGC ACTTCACAAG CTATGGCCAG GGGCCACCAC 001280 001281 CTTTGGCCAC TCCTTTCCCA CAGAATTCCT ACCAGGGCCC TGCCAGGTCA ACAAGTCACA GGGCTTCCCC ATCACAGAAG 001360 001361 CCCAGCTCTG TGACACCTCT TGGTCCCAAG CACGTTCCTA TCCCCCATTC ATGTGTTTTG TTAGGACCCT TTAGGGTTGC 001440 001441 ACATGGCAGA AACTTAATCC ACACCAACTT CAGCGAAGAA GGAATGTACT GGCTCCAGTC AGTGAAAAGT CCAGGAGGAG 001520 001521 CCATGCCTTC AGGCACGGCT GCATCCAGGC ACTCAACAGG TGTATCCAGG CACTCAACAG GTGCAGCCAA CACCTTGCCC 001600 001601 CGCAGGCTGT CAGCTCCTGC CTTCTGCTGC GTCCACGTCA CTGTAGGTGG ATTTCTCTGC ACATGGGTGA GATGGCCCCA 001680 001681 GAAGCTCTGG CTCATGGAGT CCTTGTAGCA CCTGTCCTGG CCATCCCCAG ATGAGAAAGC ATCATTTCCC ATGGCAGAAA 001760 001761 TCTGGTGGAA ACAGGAGGGA GGGGGTCGGC TCTCTTTGGT CGGATCTGGG TCTCGTGCCC ATCTCTGGGA GAGAAAAGTC 001840 001841 CCCATTCACA GAAACTGAGC AGATCCTGGA TTGGATGGGG AAGGAGAGAT GCTGGCAGAT ACACACACAT TCACTGCACT 001920 001921 CCCTGCAAGG ATAGTGACAA TAGTAGAAGC TGCTCTTTCT TGAGAAGTTA TGACGTGTGC CAGAAAATTC TACCTTTTAA 002000 002001 GGATATAGAG AGGCTTTTAT CATCCCCATT TTACAGATGA CAAAACTGAG GCTCAGAGAG GTGAAGTGAT TTGCCTATGG 002080 002081 ATGCATAGCT AAGGTCTGAC CCCACAACTC ACACTCACAA GTTAGCAAGA GGTGTTTCAC CAGGGTAGTC TGGGGGCAGA 002160 002161 AGGAGCCTGC CTGGTGAGGG AAGGGAGGTG GAGAGGTGGG GAGAGGGGAG GCCAAGAGGA GGGGACACCA GGACCTGGCC 002240 002241 TCTGGCTTGC ACAATGGGGA GGGAACCCTG GAGAAGAGGA GGTTTATGGG GGAGGCTGCT GAGTTTTTTG GGCACATATG 002320 002321 CTAAGTTGGA GGTGCCCATG GTCCTCAGGA GATGTTCGGG ATTTGGGGGT CAGAGGCATG AGCCTCGGCA TCCTGGGAAT 002400 002401 CATGGCTGTT TGCTTTGCTT TGGGAATTTC ACAGTGGTGG GGGGAAGGCG GCTGCTGACA GGAAGCACTT CCCATTTGGT 002480 002481 GGAGAAGGCA GCCAGAACCT GCATGGCAGA AGCTGCGGCC TGGGCCTGTG ACAGTGTCTA CAACTGTGGC CACAGGTTCA 002560 002561 AGGCCCTTGT AGTTGGCAGA CACAGGGCCT GAAGTTCTCT GGCCGTTGTT TTAGGGCAAA CACCTTGAGA ATGGCATTTC 002640 002641 CAAGGCCCTT GGGCTGTGCC AGGGCACCAA CGCCAGTCGA GGACCACGCC TTTCTGAGGG ATGCTTGGAA TCTCACAGAC 002720 002721 AGGGGTTCAC ATTCCGACTC TGCTTCCTAG AGGCTATGTG GCCTTGGGCG TGTCTGGAAC CTCTCTGGGC CACAGTTTGC 002800 002801 TTATCTGTGA AAGAGTCATG GTAGCCTCTC CTTATGGGTT TATGGGGAGC TTCGGATATG GAGGGTGGGG CAGCACACAG 002880 002881 GGCTCAAGCT GCAGCTCTTA GTTACCTGCT TTTCCTTTGC AGGTGTCCTA CGGGCCTGAT GGAAAGGTGG CAGGCGAAAT 002960 002961 GCACCTGGCC TCAGCGTCAG GGGCTGTGAA TGCAGTAGCA CTTGTAGCTA TGAGGTCAGA GTGGACTAGG ATGGTCCTTC 003040 003041 CACCAAGAAG CCTGGGCCTT CCTGCTCTTC GTTGTCCAGC TGCAGAAACT GATCTCATCC CTCAGGGCTT GGCACAACTG 003120 003121 CCCCTTCCTC CTCACATTCC CAAATATACC TACCCCTCCC CAACTCAATC CTCCTCACCA GACTGTGGCT CCAGGATGAC 003200 003201 AGGGCAGAGT TGGACTCACC TGTGTCTGCC AGGCCAGCTC ACCGTGGGGG CAGGTCCCAA GAGGCCTCTG GATTTGGACC 003280 003281 AACTTCCAGT GTGACCTTGA ACAAGGCCTT CGCCTCCCTC AGCCTCCGTT GCATGAGGGG TTGTGCTGGC ACATCTCAGA 003360 003361 GCAGGTAGCG CTACCTGGTG AGTTGAGGGC TCTGTCCATC ATCTTTGTCA CTGTAATGCT GGGTAACAAA TAAACACGAA 003440 003441 ACAATGAGTG CTCG |
Predicted Small Protein
Name | NONHSAT040032_smProtein_440:724 |
Length | 95 |
Molecular weight | 9634.6073 |
Aromaticity | 0.0744680851064 |
Instability index | 45.3159574468 |
Isoelectric point | 4.79168701172 |
Runs | 13 |
Runs residual | 0.00948196114709 |
Runs probability | 0.0325914149444 |
Amino acid sequence | MPARGDGDVRGGVFTDDATLQAQGCVVVAGVLLDRLTFREASSTQALVLEGLWAHKESGM FLPPRSPPAWQGPGAGQGGAGWDGGAPGGSRDTW |
Secondary structure | LLLLLLLLLLLLEELLHHHLLLLLEEEEEEEEELEEEEEELLHHHHHHHHHHHHHHHLLL EELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |