Difference between revisions of "Main Page"
(233 intermediate revisions by 6 users not shown) | |||
Line 2: | Line 2: | ||
__NOTOC__ | __NOTOC__ | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
+ | |||
<!-----------------title---------------------> | <!-----------------title---------------------> | ||
{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;" | {|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;" | ||
|style="width:50%; text-align:center; white-space:nowrap; color:#000"| | |style="width:50%; text-align:center; white-space:nowrap; color:#000"| | ||
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to LncRNAWiki</div> | <div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to LncRNAWiki</div> | ||
− | <div style="padding:0em; font-size:100%">[[ | + | <div style="padding:0em; font-size:100%">[[:Category:Transcripts|106,063]] human long non-coding RNAs inside</div> |
− | |||
|style="width:18%;| | |style="width:18%;| | ||
− | * | + | *[[:Category:Transcripts|Transcripts]] |
− | *[[ | + | *[[:Category:Genes|Genes]] |
+ | *[[LncRNAWiki:Classification|Classification]] | ||
|style="width:18%;| | |style="width:18%;| | ||
− | *[[ | + | *[[LncRNAWiki:Featured|Featured LncRNAs]] |
− | *[[ | + | *[http://bigd.big.ac.cn/lncbook/disease Disease] |
+ | *[http://bigd.big.ac.cn/lncbook/function Function] | ||
|style="width:18%;| | |style="width:18%;| | ||
− | *[[ | + | *[[LncRNAWiki:Small_proteins|Small Proteins]] |
− | + | *[http://bigd.big.ac.cn/lgc Prediction] | |
+ | *[http://bigd.big.ac.cn/lncbook/blast BLAST] | ||
|} | |} | ||
− | |||
<!---------------welcome Box-----------------> | <!---------------welcome Box-----------------> | ||
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | {|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | ||
|valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"| | |valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"| | ||
<div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div> | <div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div> | ||
− | <div style="padding:0.5em 0.5em;"> | + | <div style="padding:1em 0.5em;"> |
+ | {{LncRNAWiki:Summary}} | ||
+ | <div style="padding:0.2em 0.5em;text-align:center;color:#2d2d2d;"> ''LncRNAWiki, an important component of '' [http://bigd.big.ac.cn/lncbook '''LncBook'''], ''provides community annotations of human lncRNAs''</div> | ||
+ | </div> | ||
|} | |} | ||
Line 30: | Line 35: | ||
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | {|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | ||
|- | |- | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | <!----------- | + | <!-----------Featured lncRNAs------------> |
− | |style="padding:0px | + | |valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:50%;"| |
+ | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[http://lncrna.big.ac.cn/index.php/LncRNAWiki:Featured Featured lncRNAs]</div> | ||
+ | <div style="padding:0.5em 0.5em;">[[File:Featured-2019-3.png|center|500px|link=LncRNAWiki:Featured]]</div> | ||
+ | |||
+ | |style="padding:0px 4px;"| | ||
+ | |||
+ | <!-----------Top 10 lncRNA-associated diseases------------> | ||
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"| | |valign="top" style="border:1px solid #66B3FF; background-color:transparent;"| | ||
− | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> | + | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Top 10 [http://bigd.big.ac.cn/lncbook/disease lncRNA-associated diseases]</div> |
+ | |||
<div style="padding:0.5em 0.5em;"> | <div style="padding:0.5em 0.5em;"> | ||
− | + | ''Diseases and their associated lncRNAs' counts are listed below.'' | |
− | + | ||
− | [[ | + | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Neoplasms Neoplasms]: 1,077 |
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Digestive%20System%20Diseases Digestive System Diseases]: 427 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Male%20Urogenital%20Diseases Male Urogenital Diseases]: 117 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Female%20Urogenital%20Diseases%20and%20Pregnancy%20Complications Female Urogenital Diseases and Pregnancy Complications]: 196 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Respiratory%20Tract%20Diseases Respiratory Tract Diseases]: 224 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Skin%20and%20Connective%20Tissue%20Diseases Skin and Connective Tissue Diseases]: 165 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Endocrine%20System%20Diseases Endocrine System Diseases]: 129 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Cardiovascular%20Diseases Cardiovascular Diseases]: 155 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Congenital,%20Hereditary,%20and%20Neonatal%20Diseases%20and%20Abnormalities Congenital, Hereditary, and Neonatal Diseases and Abnormalities]: 150 | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Nervous%20System%20Diseases Nervous System Diseases]: 103 | ||
+ | |||
</div> | </div> | ||
|} | |} | ||
<!--------------main part two----------------> | <!--------------main part two----------------> | ||
+ | {|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | ||
+ | |- | ||
+ | |||
+ | <!-----------------Extensively curated----------------------> | ||
+ | |valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:50%;"| | ||
+ | {|style="width:100%;" | ||
+ | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Extensively curated</div> | ||
+ | |||
+ | |style="width:33%;| | ||
+ | * [[NONHSAT028508|''HOTAIR'']] | ||
+ | |||
+ | * [[ENST00000534336.1|''MALAT-1'']] | ||
+ | |||
+ | * [[NONHSAT017465|''H19'']] | ||
+ | |||
+ | * [[NONHSAT039745|''MEG3'']] | ||
+ | |||
+ | * [[ENST00000501122.2|''NEAT1'']] | ||
+ | |||
+ | * [[ENST00000513868.2|''PVT1'']] | ||
+ | |||
+ | * [[NONHSAT007663|''GAS5'']] | ||
+ | |||
+ | * [[Lnc-C9orf53-2:1|''CDKN2B-AS1'']] | ||
+ | |||
+ | * [[NONHSAT119717|''HOTTIP'']] | ||
+ | |||
+ | * [[NONHSAT113149|''7SK'']] | ||
+ | |||
+ | |style="width:33%;| | ||
+ | * [[BANCR|''BANCR'']] | ||
+ | |||
+ | * [[BTG3-AS1|''BTG3-AS1'']] | ||
+ | |||
+ | * [[CERNA2|''CERNA2'']] | ||
+ | |||
+ | * [[FLICR|''FLICR'']] | ||
+ | |||
+ | * [[GUARDIN|''GUARDIN'']] | ||
+ | |||
+ | * [[LINC-ROR|''LINC-ROR'']] | ||
+ | |||
+ | * [[PINCR|''PINCR'']] | ||
+ | |||
+ | * [[PLUT|''PLUT'']] | ||
+ | |||
+ | * [[LUNAR1|''LUNAR1'']] | ||
+ | |||
+ | * [[Lnc-SRA1-1:1|''SRA'']] | ||
+ | |||
+ | |style="width:34%;| | ||
+ | * [[NONHSAT017524|''KCNQ1OT1'']] | ||
+ | |||
+ | * [[NONHSAT076153|''PCGEM1'']] | ||
+ | |||
+ | * [[NONHSAT137541|''XIST'']] | ||
+ | |||
+ | * [[Lnc-EPCAM-1:2|''BCYRN1'']] | ||
+ | |||
+ | * [[NONHSAT084827|''TUG1'']] | ||
+ | |||
+ | * [[Lnc-OR10H5-1:1|''UCA1'']] | ||
+ | |||
+ | * [[NONHSAT107640|''HULC'']] | ||
+ | |||
+ | * [[NONHSAT129019|''PRNCR1'']] | ||
+ | |||
+ | * [[TP53COR1|''TP53COR1'']] | ||
+ | |||
+ | * [[Lnc-CDKN1A-1:1|''PANDAR'']] | ||
+ | |} | ||
+ | |||
+ | |style="padding:0px 4px;"| | ||
+ | |||
+ | <!-----------------Function----------------------> | ||
+ | |valign="top" style="border:1px solid #66B3FF; background-color:transparent;"| | ||
+ | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[http://bigd.big.ac.cn/lncbook/function Function]</div> | ||
+ | |||
+ | <div style="padding:0.5em 0.5em;"> | ||
+ | ''Functional mechanisms and their associated lncRNAs' counts are listed below.'' | ||
+ | |||
+ | * [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=transcriptional%20regulation Transcriptional regulation]: 282 | ||
+ | * [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=ceRNA ceRNA]: 73 | ||
+ | * [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=translational%20control Translational control]: 13 | ||
+ | * [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=protein%20localization Protein localization]: 6 | ||
+ | * [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=splicing%20regulation Splicing regulation]: 4 | ||
+ | * [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=RNAi RNAi]: 3 | ||
+ | |||
+ | </div> | ||
+ | |} | ||
+ | |||
+ | <!--------------main part three----------------> | ||
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | {|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;" | ||
<!------------- Participating----------------> | <!------------- Participating----------------> | ||
− | |valign="top" style="border:1px solid #66B3FF; background-color:transparent; width: | + | |valign="top" style="border:1px solid #66B3FF; background-color:transparent; width:75%"| |
− | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> | + | <div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">How to Cite</div> |
<div style="padding:0.5em 1em;"> | <div style="padding:0.5em 1em;"> | ||
− | * [ | + | If you use any data or information in your work, please cite the following publications. |
− | + | ||
+ | Primary publication: | ||
+ | * [http://nar.oxfordjournals.org/content/early/2014/11/15/nar.gku1167.full '''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs'''.] (2015) ''Nucleic Acids Research'', 43:D187-92. | ||
− | + | Related publication: | |
− | + | * [https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.82 '''Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook'''.] '' Curr Protoc Bioinformatics 2019''. | |
− | |||
− | |||
− | |||
</div> | </div> | ||
Revision as of 09:23, 15 January 2020
Welcome to LncRNAWiki
106,063 human long non-coding RNAs inside
|
Introduction
LncRNAWiki is a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs), viz., a community-curated lncRNA knowledgebase. Unlike conventional biological databases based on expert curation, lncRNAWiki harnesses collective intelligence to collect, edit and annotate information about lncRNAs, quantifies users' contributions in each annotated lncRNA and provides explicit authorship to encourage more participation from the whole scientific community. LncRNAWiki, an important component of LncBook, provides community annotations of human lncRNAs
|
Top 10 lncRNA-associated diseases
Diseases and their associated lncRNAs' counts are listed below.
|
|
Functional mechanisms and their associated lncRNAs' counts are listed below.
|
How to Cite
If you use any data or information in your work, please cite the following publications. Primary publication:
Related publication:
|
Visitor Statistics
|