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<!-----------------title--------------------->
 
<!-----------------title--------------------->
 
{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;"
 
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|style="width:18%;|
*[[:Category:Transcripts|LncRNA Transcripts]]
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*[[:Category:Transcripts|Transcripts]]
 +
*[[:Category:Genes|Genes]]
 
*[[LncRNAWiki:Classification|Classification]]
 
*[[LncRNAWiki:Classification|Classification]]
 
|style="width:18%;|
 
|style="width:18%;|
*[[:Category:Genes|Genes]]
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*[[LncRNAWiki:Featured|Featured LncRNAs]]
*[[Special:BLAST|BLAST]]
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*[http://bigd.big.ac.cn/lncbook/disease Disease]
|style="width:18%;|
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*[http://bigd.big.ac.cn/lncbook/function Function]
*[[LncRNAWiki:Download|Downloads]]
 
*[[LncRNAWiki:FAQ|FAQ]]
 
 
|style="width:18%;|
 
|style="width:18%;|
*[[File:New5.png]][[LncRNAWiki:Featured|Featured LncRNAs]]
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*[[LncRNAWiki:Small_proteins|Small Proteins]]
*[[File:New5.png]][[LncRNAWiki:Small_proteins|Small Proteins]]
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*[http://bigd.big.ac.cn/lgc Prediction]
*[[File:New5.png]][[LncRNAWiki:Disease|Diseases]]
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*[http://bigd.big.ac.cn/lncbook/blast BLAST]
 
|}
 
|}
 
 
<!---------------welcome Box----------------->
 
<!---------------welcome Box----------------->
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
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<div style="padding:1em 0.5em;">
 
<div style="padding:1em 0.5em;">
 
{{LncRNAWiki:Summary}}
 
{{LncRNAWiki:Summary}}
<div style="padding:0.2em 0.5em;text-align:center;font-weight:bold;color:#2d2d2d;">''Imagine a world in which every single person on the planet has free access to the sum of all human knowledge. — Jimmy Wales, Founder of Wikipedia''</div>
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<div style="padding:0.2em 0.5em;text-align:center;color:#2d2d2d;"> ''LncRNAWiki, an important component of '' [http://bigd.big.ac.cn/lncbook '''LncBook'''], ''provides community annotations of human lncRNAs''</div>
 
</div>
 
</div>
----
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|}
  
|}
 
 
<!--------------main part one---------------->
 
<!--------------main part one---------------->
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
|-
 
|-
  
 +
<!-----------Featured lncRNAs------------>
 +
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:50%;"|
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[http://lncrna.big.ac.cn/index.php/LncRNAWiki:Featured Featured lncRNAs]</div>
 +
<div style="padding:0.5em 0.5em;">[[File:Featured-2019-3.png|center|500px|link=LncRNAWiki:Featured]]</div>
 +
 +
|style="padding:0px 4px;"|
  
<!-----------Top 10 diseases------------>
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<!-----------Top 10 lncRNA-associated diseases------------>
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:45%;"|
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|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"|
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Top 10 diseases</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Top 10 [http://bigd.big.ac.cn/lncbook/disease lncRNA-associated diseases]</div>
  
 
<div style="padding:0.5em 0.5em;">
 
<div style="padding:0.5em 0.5em;">
* 212 [[LncRNAWiki:Cancer|Cancer]]
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''Diseases and their associated lncRNAs' counts are listed below.''
  
* 37 [[LncRNAWiki:Nervous System Diseases|Nervous System Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Neoplasms Neoplasms]: 1,077
  
* 22 [[LncRNAWiki:Cardiovascular Diseases|Cardiovascular Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Digestive%20System%20Diseases Digestive System Diseases]: 427
  
* 21 [[LncRNAWiki:Congenital, Hereditary, and Neonatal Diseases and Abnormalities|Congenital, Hereditary, and Neonatal Diseases and Abnormalities]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Male%20Urogenital%20Diseases Male Urogenital Diseases]: 117
  
* 20 [[LncRNAWiki:Musculoskeletal Diseases|Musculoskeletal Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Female%20Urogenital%20Diseases%20and%20Pregnancy%20Complications Female Urogenital Diseases and Pregnancy Complications]: 196
  
* 19 [[LncRNAWiki:Hemic and Lymphatic Diseases|Hemic and Lymphatic Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Respiratory%20Tract%20Diseases Respiratory Tract Diseases]: 224
  
* 18 [[LncRNAWiki:Endocrine System Diseases|Endocrine System Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Skin%20and%20Connective%20Tissue%20Diseases Skin and Connective Tissue Diseases]: 165
  
* 14 [[LncRNAWiki:Mental Disorders|Mental Disorders]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Endocrine%20System%20Diseases Endocrine System Diseases]: 129
  
* 9 [[LncRNAWiki:Skin and Connective Tissue Diseases|Skin and Connective Tissue Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Cardiovascular%20Diseases Cardiovascular Diseases]: 155
  
* 9 [[LncRNAWiki:Nutritional and Metabolic Diseases|Nutritional and Metabolic Diseases]]
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* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Congenital,%20Hereditary,%20and%20Neonatal%20Diseases%20and%20Abnormalities Congenital, Hereditary, and Neonatal Diseases and Abnormalities]: 150
 +
 
 +
* [http://bigd.big.ac.cn/lncbook/disease?filter=diseasemesh&term=Nervous%20System%20Diseases Nervous System Diseases]: 103
  
''Top diseases and the lncRNA numbers are listed.''
 
 
</div>
 
</div>
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|}
  
|style="padding:0px 4px;"|
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<!--------------main part two---------------->
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{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
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|-
  
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<!-----------------Extensively curated---------------------->
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|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:50%;"|
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{|style="width:100%;"
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Extensively curated</div>
  
<!-----------Featured lncRNAs------------>
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|style="width:33%;|
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:54%;"|
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* [[NONHSAT028508|''HOTAIR'']]
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured lncRNAs</div>
 
<div style="padding:0.5em 0.5em;">
 
<table>
 
<tr>
 
<td>[[File:Featured2.png|left|410px|caption]]</td>
 
<td valign="top">
 
Extensively curated:
 
  
 
* [[ENST00000534336.1|''MALAT-1'']]
 
* [[ENST00000534336.1|''MALAT-1'']]
  
* [[NONHSAT028508|''HOTAIR'']]
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* [[NONHSAT017465|''H19'']]
 +
 
 +
* [[NONHSAT039745|''MEG3'']]
 +
 
 +
* [[ENST00000501122.2|''NEAT1'']]
 +
 
 +
* [[ENST00000513868.2|''PVT1'']]
 +
 
 +
* [[NONHSAT007663|''GAS5'']]
 +
 
 +
* [[Lnc-C9orf53-2:1|''CDKN2B-AS1'']]
 +
 
 +
* [[NONHSAT119717|''HOTTIP'']]
 +
 
 +
* [[NONHSAT113149|''7SK'']]
 +
 
 +
|style="width:33%;|
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* [[BANCR|''BANCR'']]
 +
 
 +
* [[BTG3-AS1|''BTG3-AS1'']]
 +
 
 +
* [[CERNA2|''CERNA2'']]
 +
 
 +
* [[FLICR|''FLICR'']]
 +
 
 +
* [[GUARDIN|''GUARDIN'']]
 +
 
 +
* [[LINC-ROR|''LINC-ROR'']]
 +
 
 +
* [[PINCR|''PINCR'']]
 +
 
 +
* [[PLUT|''PLUT'']]
 +
 
 +
* [[LUNAR1|''LUNAR1'']]
 +
 
 +
* [[Lnc-SRA1-1:1|''SRA'']]
 +
 
 +
|style="width:34%;|
 +
* [[NONHSAT017524|''KCNQ1OT1'']]
 +
 
 +
* [[NONHSAT076153|''PCGEM1'']]
 +
 
 +
* [[NONHSAT137541|''XIST'']]
 +
 
 +
* [[Lnc-EPCAM-1:2|''BCYRN1'']]
 +
 
 +
* [[NONHSAT084827|''TUG1'']]
 +
 
 +
* [[Lnc-OR10H5-1:1|''UCA1'']]
  
* [[ENST00000609176.1|''AIRN'']]
+
* [[NONHSAT107640|''HULC'']]
  
* [[NONHSAT017465|''H19'']]
+
* [[NONHSAT129019|''PRNCR1'']]
  
* [[NONHSAT039745|''MEG3'']]
+
* [[TP53COR1|''TP53COR1'']]
</td>
 
</tr>
 
</table>
 
</div>
 
  
 +
* [[Lnc-CDKN1A-1:1|''PANDAR'']]
 
|}
 
|}
  
<!--------------main part two---------------->
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|style="padding:0px 4px;"|
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
|-
 
<!-----------------Classification---------------------->
 
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:45%;"|
 
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Classification</div>
 
<div style="padding:0.5em 0.5em;">[[File:web2a.png|center|410px]]</div>
 
  
|style="padding:0px 4px;"|
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<!-----------------Function---------------------->
 +
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"|
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[http://bigd.big.ac.cn/lncbook/function Function]</div>
  
<!-----------------Small proteins---------------------->
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<div style="padding:0.5em 0.5em;">
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;53%;"|
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''Functional mechanisms and their associated lncRNAs' counts are listed below.''
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Small proteins</div>
 
<table>
 
<tr>
 
<td>
 
<div style="padding:0.5em 0.5em;">[[File:SmallPRO-1.png|left|330px]]</div>
 
</td>
 
<td valign="top">
 
* '''9,387''' lncRNAs potentially encoding small proteins
 
  
* '''2,246''' among them are with high confidence ([[LncRNAWiki:small proteins|lncRNAs and small proteins]])
+
* [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=transcriptional%20regulation Transcriptional regulation]: 282
 +
* [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=ceRNA ceRNA]: 73
 +
* [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=translational%20control Translational control]: 13
 +
* [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=protein%20localization Protein localization]: 6
 +
* [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=splicing%20regulation Splicing regulation]: 4
 +
* [http://bigd.big.ac.cn/lncbook/function?filter=functionmec&term=RNAi RNAi]: 3
  
</td>
+
</div>
</tr>
 
</table>
 
 
|}
 
|}
  
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* [http://nar.oxfordjournals.org/content/early/2014/11/15/nar.gku1167.full '''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs'''.] (2015) ''Nucleic Acids Research'', 43:D187-92.
 
* [http://nar.oxfordjournals.org/content/early/2014/11/15/nar.gku1167.full '''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs'''.] (2015) ''Nucleic Acids Research'', 43:D187-92.
  
Related publications:
+
Related publication:
* [http://nar.oxfordjournals.org/content/early/2016/11/28/nar.gkw1060.full '''The BIG Data Center: from deposition to integration to translation'''.] ''Nucleic Acids Research'' 2017, XXXX.
+
* [https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.82 '''Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook'''.] '' Curr Protoc Bioinformatics 2019''.
* [https://www.landesbioscience.com/journals/rnabiology/article/24604/?nocache=227993923 '''On the classification of long non-coding RNAs'''.] (2013) ''RNA Biology'', 10(6),924-933.
 
 
</div>
 
</div>
  

Revision as of 09:23, 15 January 2020



Welcome to LncRNAWiki
106,063 human long non-coding RNAs inside
Introduction

LncRNAWiki is a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs), viz., a community-curated lncRNA knowledgebase. Unlike conventional biological databases based on expert curation, lncRNAWiki harnesses collective intelligence to collect, edit and annotate information about lncRNAs, quantifies users' contributions in each annotated lncRNA and provides explicit authorship to encourage more participation from the whole scientific community.

LncRNAWiki, an important component of LncBook, provides community annotations of human lncRNAs
Featured-2019-3.png
Extensively curated

Functional mechanisms and their associated lncRNAs' counts are listed below.

How to Cite

If you use any data or information in your work, please cite the following publications.

Primary publication:

Related publication:

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