Difference between revisions of "Main Page"

From LncRNAWiki
Jump to: navigation, search
(43 intermediate revisions by the same user not shown)
Line 6: Line 6:
 
|style="width:50%; text-align:center; white-space:nowrap; color:#000"|
 
|style="width:50%; text-align:center; white-space:nowrap; color:#000"|
 
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to LncRNAWiki</div>
 
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to LncRNAWiki</div>
−
<div style="padding:0em; font-size:100%">[[:Category:Transcripts|106,053]] human long non-coding RNAs inside</div>
+
<div style="padding:0em; font-size:100%">[[:Category:Transcripts|106,063]] human long non-coding RNAs inside</div>
  
 
|style="width:18%;|
 
|style="width:18%;|
Line 31: Line 31:
 
<div style="padding:0.2em 0.5em;text-align:center;font-weight:bold;color:#2d2d2d;">''Imagine a world in which every single person on the planet has free access to the sum of all human knowledge. — Jimmy Wales, Founder of Wikipedia''</div>
 
<div style="padding:0.2em 0.5em;text-align:center;font-weight:bold;color:#2d2d2d;">''Imagine a world in which every single person on the planet has free access to the sum of all human knowledge. — Jimmy Wales, Founder of Wikipedia''</div>
 
</div>
 
</div>
−
----
+
|}
  
−
|}
 
 
<!--------------main part one---------------->
 
<!--------------main part one---------------->
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
|-
 
|-
−
<!-----------Featured lncRNAs------------>
+
<!-----------Top 10 lncRNA-associated diseases------------>
−
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:55%;"|
+
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:45%;"|
−
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured lncRNAs</div>
+
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Top 10  [[LncRNAWiki:Disease|lncRNA-associated diseases]]</div>
−
<div style="padding:0.5em 0.5em;">[[File:Featured2.png|left|410px|caption]]  
+
 
 +
<div style="padding:0.5em 0.5em;">
 +
''Diseases and their associated lncRNAs' counts are listed below.''
 +
 
 +
* [[LncRNAWiki:Cancer|Cancer]]: 212
 +
 
 +
* [[LncRNAWiki:Nervous System Diseases|Nervous System Diseases]]: 37
 +
 
 +
* [[LncRNAWiki:Cardiovascular Diseases|Cardiovascular Diseases]]: 22
 +
 
 +
* [[LncRNAWiki:Congenital, Hereditary, and Neonatal Diseases and Abnormalities|Congenital, Hereditary, and Neonatal Diseases and Abnormalities]]: 21
 +
 
 +
* [[LncRNAWiki:Musculoskeletal Diseases|Musculoskeletal Diseases]]: 20
 +
 
 +
* [[LncRNAWiki:Hemic and Lymphatic Diseases|Hemic and Lymphatic Diseases]]: 19
 +
 
 +
* [[LncRNAWiki:Endocrine System Diseases|Endocrine System Diseases]]: 18
 +
 
 +
* [[LncRNAWiki:Mental Disorders|Mental Disorders]]: 14
 +
 
 +
* [[LncRNAWiki:Skin and Connective Tissue Diseases|Skin and Connective Tissue Diseases]]: 9
 +
 
 +
* [[LncRNAWiki:Nutritional and Metabolic Diseases|Nutritional and Metabolic Diseases]]: 9
 +
 
 +
</div>
 +
 
 +
|style="padding:0px 4px;"|
  
−
In contrast to the previous version that had '''86''' curated lncRNAs, the updated version has a total of '''948''' lncRNAs that are community-curated ([[LncRNAWiki:Featured|Featured lncRNAs]]).
 
  
 +
<!-----------Featured lncRNAs------------>
 +
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:54.5%;"|
 +
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[[LncRNAWiki:Featured|Featured lncRNAs]]</div>
 +
<div style="padding:0.5em 0.5em;">
 +
<table>
 +
<tr>
 +
<td>[[File:Featured4.png|left|430px|link=LncRNAWiki:Featured]]</td>
 +
<td valign="top">
 +
Extensively curated:
  
−
<br /></div>
+
* [[BANCR|''BANCR'']]
  
−
<!-----------Top 10 diseases------------>
+
* [[BTG3-AS1|''BTG3-AS1'']]
−
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:45%;"|
 
−
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Top 10 diseases</div>
 
  
−
* 212 [[LncRNAWiki:Cancer|Cancer]]
+
* [[CERNA2|''CERNA2'']]
  
−
* 37 [[LncRNAWiki:Nervous System Diseases|Nervous System Diseases]]
+
* [[FLICR|''FLICR'']]
  
−
* 22 [[LncRNAWiki:Cardiovascular Diseases|Cardiovascular Diseases]]
+
* [[JADRR|''JADRR'']]
  
−
* 21 [[LncRNAWiki:Congenital, Hereditary, and Neonatal Diseases and Abnormalities|Congenital, Hereditary, and Neonatal Diseases and Abnormalities]]
+
* [[LINC-ROR|''LINC-ROR'']]
  
−
* 20 [[LncRNAWiki:Musculoskeletal Diseases|Musculoskeletal Diseases]]
+
* [[PINCR|''PINCR'']]
  
−
* 19 [[LncRNAWiki:Hemic and Lymphatic Diseases|Hemic and Lymphatic Diseases]]
+
* [[PLUT|''PLUT'']]
  
−
* 18 [[LncRNAWiki:Endocrine System Diseases|Endocrine System Diseases]]
+
* [[SMILR|''SMILR'']]
  
−
* 14 [[LncRNAWiki:Mental Disorders|Mental Disorders]]
+
* [[LUNAR1|''LUNAR1'']]
  
−
* 9 [[LncRNAWiki:Skin and Connective Tissue Diseases|Skin and Connective Tissue Diseases]]
+
* [[XACT|''XACT'']]
  
−
* 9 [[LncRNAWiki:Nutritional and Metabolic Diseases|Nutritional and Metabolic Diseases]]
 
  
−
''Top diseases and the lncRNA numbers are listed.''
+
</td>
 +
</tr>
 +
</table>
 +
</div>
 
|}
 
|}
  
Line 77: Line 110:
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
|-
 
|-
−
<!-----------------Classification---------------------->
+
<!-----------------Small proteins---------------------->
−
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:55%;"|
+
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;45%;"|
−
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Classification</div>
+
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[[LncRNAWiki:Small_proteins|Small proteins]]</div>
−
<div style="padding:0.5em 0.5em;">[[File:web2a.png|left|410px]]  
+
<div style="padding:0.5em 0.5em;">[[File:SmallPRO-5.png|center|220px|link=LncRNAWiki:Small_proteins]]</div>
−
LncRNAs are classified into seven groups based on their genomic location in respect to protein-coding genes (Ma etal. 2013, RNA Biology). [[Help:Contents#Database content|''Help'']]
+
* [[LncRNAWiki:Small_proteins|'''9,387''']] lncRNAs potentially encoding small proteins
−
<br /></div>
+
 
 +
* '''2,246''' small proteins identified with high confidence, by considering protein instability, secondary structure and transmembrane helix
  
 +
|style="padding:0px 4px;"|
  
−
<!-----------------Small proteins---------------------->
+
<!-----------------Classification---------------------->
−
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;45%;"|
 
−
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Small proteins</div>
 
−
<div style="padding:0.5em 0.5em;">[[File:SmallPRO-1.png|left|330px]]
 
−
'''9,387''' lncRNAs potentially encoding small proteins and '''2,246''' among them are with high confidence ([[LncRNAWiki:small proteins|lncRNAs and small proteins]]). [[Help:Contents#Database content|''Help'']]
 
−
<br /></div>
 
  
 +
|valign="top" style="border:1px solid #66B3FF; background-color:transparent;width:54.5%;"|
 +
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">[[LncRNAWiki:Classification|Classification]]</div>
 +
<div style="padding:0.5em 0.5em;">[[File:Classification.png|center|400px|link=LncRNAWiki:Classification]]</div>
 
|}
 
|}
  
Line 100: Line 133:
 
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">How to Cite</div>
 
<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">How to Cite</div>
 
<div style="padding:0.5em 1em;">
 
<div style="padding:0.5em 1em;">
−
If you use any data or information in your work, please cite the following primary publication:
+
If you use any data or information in your work, please cite the following publications.
−
* Lina Ma, Ang Li, Dong Zou, Xingjian Xu, Lin Xia, Jun Yu, Vladimir B. Bajic and Zhang Zhang. [http://nar.oxfordjournals.org/content/early/2014/11/15/nar.gku1167.full '''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs'''.] (2015) ''Nucleic Acids Research'', 43:D187-92.
+
 
 +
Primary publication:
 +
* [http://nar.oxfordjournals.org/content/early/2014/11/15/nar.gku1167.full '''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs'''.] (2015) ''Nucleic Acids Research'', 43:D187-92.
  
−
Related publication:
+
Related publications:
−
* BIG Data Center Members: [http://nar.oxfordjournals.org/content/early/2016/11/28/nar.gkw1060.full '''The BIG Data Center: from deposition to integration to translation'''.] ''Nucleic Acids Research'' 2017, accepted and in press.
+
* [https://www.ncbi.nlm.nih.gov/pubmed/29036542 '''Database Resources of the BIG Data Center in 2018'''.] ''Nucleic Acids Research 2018''.
−
* Lina Ma, Vladimir B. Bajic, Zhang Zhang. [https://www.landesbioscience.com/journals/rnabiology/article/24604/?nocache=227993923 '''On the classification of long non-coding RNAs'''.] (2013) ''RNA Biology'', 10(6),924-933.
+
* [http://nar.oxfordjournals.org/content/early/2016/11/28/nar.gkw1060.full '''The BIG Data Center: from deposition to integration to translation'''.] (2017) ''Nucleic Acids Research'', 45:D18-24.
 +
* [https://www.landesbioscience.com/journals/rnabiology/article/24604/?nocache=227993923 '''On the classification of long non-coding RNAs'''.] (2013) ''RNA Biology'', 10:924-933.
 
</div>
 
</div>
  

Revision as of 04:13, 27 November 2017


Welcome to LncRNAWiki
106,063 human long non-coding RNAs inside
Introduction

LncRNAWiki is a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs), viz., a community-curated lncRNA knowledgebase. Unlike conventional biological databases based on expert curation, lncRNAWiki harnesses collective intelligence to collect, edit and annotate information about lncRNAs, quantifies users' contributions in each annotated lncRNA and provides explicit authorship to encourage more participation from the whole scientific community.

Imagine a world in which every single person on the planet has free access to the sum of all human knowledge. — Jimmy Wales, Founder of Wikipedia
SmallPRO-5.png
  • 9,387 lncRNAs potentially encoding small proteins
  • 2,246 small proteins identified with high confidence, by considering protein instability, secondary structure and transmembrane helix


Classification.png
How to Cite

If you use any data or information in your work, please cite the following publications.

Primary publication:

Related publications:

Visitor Statistics

Retrieved from "https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Main_Page&oldid=1273961"