LncRNAWiki:Featured

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Name Transcript ID Alias Description
21A NONHSAT128494 ncRNA 21A N/A
7SK NONHSAT113149 7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 RNA, 7SK small nuclear
7SL lnc-LRR1-1:1 7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 RNA, 7SL, cytoplasmic 1
AIR ENST00000609176.1 AIRN, IGF2RAS Antisense of IGF2R non-protein coding RNA
AK023948 NONHSAT129210 N/A
BC200 lnc-EPCAM-1:2 BCYRN1,BC200a, NCRNA00004, LINC00004 BCYRN1, brain cytoplasmic RNA 1
CYP4A22-AS1 ENST00000444042.2 Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 CYP4A22 antisense RNA 1
cyrano ENST00000500949.2 LOC729082, linc-NUSAP1-1, OIP5-AS1 OIP5 antisense RNA 1
DHFR upstream transcripts NONHSAT102417 DHFR minor transcript 5'-UTR, ENSG00000228716
DISC2 NONHSAT010191 DISC1-AS1, DISC1OS, NCRNA00015 disrupted in schizophrenia 2 (non-protein coding)
EGO NONHSAT087635 EGOT, ENSG00000235947 Eosinophil granule ontogeny (EGO) RNA
Emx2os lnc-PDZD8-3:1 ENSG00000229847 Emx2 opposite strand transcript.
Evf2 lnc-DLX5-3:1 Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
GAS5 NONHSAT007663 SNHG2, ENSG00000234741
Gomafu lnc-CRYBA4-2:1 MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783 MIAT: myocardial infarction associated transcript ((Ishii 2006)).
RNCR2: retinal noncoding RNA 2 ((Blackshaw 2004)).
H19 NONHSAT017465 Q96MK8,ENSG00000130600 H19, imprinted maternally expressed transcript (non-protein coding)
HAR1A lnc-BIRC7-2:1 HAR1F, ENSG00000238820 highly accelerated region 1A
HAR1B ENST00000447910.2 HAR1R, ENSG00000231133 highly accelerated region 1B
HOTAIR NONHSAT028508 Gm16258, Hox antisense intergenic RNA, ENSG00000228630 Hox antisense intergenic RNA
HOTAIRM1 lnc-EVX1-12:1 HIT06113, HIT92376, linc1548, ENSG00000233429 HOXA transcript antisense RNA, myeloid-specific 1
HOTTIP NONHSAT119717 HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 HOXA transcript at the distal tip
Hoxa11as NONHSAT119704 Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990 HOXA11 antisense RNA
HOXA3as NONHSAT119676 HIT12844, HIT94153, HOXA-AS2, ENSG00000253552 N/A
HOXA6as lnc-EVX1-9:1 HIT16800 N/A
HULC NONHSAT107640 ENSG00000251164 hepatocellular carcinoma up-regulated long non-coding RNA
IPW NONHSAT041063 NCRNA00002 imprinted in Prader-Willi syndrome
Jpx lnc-ZCCHC13-1:1 Enox, NCRNA00183, ENSG00000225470 Enox (expressed neighbor of Xist)
Kcnq1ot1 NONHSAT017524 LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821 Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
KRASP1 NONHSAT113225 ENSG00000220635 KRAS Pseudogene 1
LINC00568 ENST00000416894.1 Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1 focally amplified long non-coding RNA in epithelial cancer
lincRNA-RoR NONHSAT059436 lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609 long intergenic non-protein coding RNA, regulator of reprogramming
LOC100887755 lnc-SNAI1-1:1 Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 translation regulatory long non-coding RNA 1
LOC285194 NONHSAT091315 LSAMP-AS3, ENSG00000243197,TUSC7 tumor suppressor candidate 7 (non-protein coding)
LUST NONHSAT089783 Je2, ENSG00000003756 LUCA-15-specific transcript.
Malat1 ENST00000534336.1 Neat2, ENSG00000251562 Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
mascRNA lnc-SCYL1-1:5 Malat1 mascRNA (MALAT1-associated small cytoplasmic RNA)
MEG3 NONHSAT039745 Gtl2, ENSG00000214548 maternally expressed 3 (non-protein coding)
ncR-uPAR NONHSAT102247 NCRUPAR, ENSG00000225407 non-protein coding RNA, upstream of F2R/PAR1
NDM29 lnc-C11orf16-1:1 29A neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)).
Nespas lnc-CTSZ-5:1 Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590 Nespas: neuroendocrine secretory protein (Nesp) antisense.
NRON NONHSAT134764 ENSG00000253079 non-protein coding RNA, repressor of NFAT
NTT NONHSAT115106 noncoding transcript in T cells.
Otx2os1 lnc-C14orf101-5:1 OTX2-AS1, ENSG00000248550 OTX2 opposite strand transcript 1
PANDA lnc-CDKN1A-1:1 P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR promoter of CDKN1A antisense DNA damage activated RNA
PCGEM1 NONHSAT076153 ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA Prostate-specific transcript 1
PDZK1IP1-AS1 ENST00000429328.2 Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853 long intergenic non-protein coding RNA 853
PRINS NONHSAT011777 ENSG00000238115 Psoriasis susceptibility-related RNA Gene Induced by Stress
PTENP1 NONHSAT130775 PTENpg1, PTEN2, ENSG00000237984 PTEN Pseudogene 1
Rian ENST00000553584.1 Irm, MEG8 and Bsr, linc1458, ENSG00000258399 Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
RNCR3 lnc-TNKS-1:1 A930011O12Rik, LOC157627, ENSG00000253230 Retinal noncoding RNA 3
SAF NONHSAT015489 FAS-AS,ENSG00000026103,FAS-AS1 FAS antisense RNA 1
SCA8 NONHSAT034251 ATXN8OS, KLHL1AS, ENSG00000230223 Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
SNHG1 NONHSAT021826 UHG, ENSG00000255717 SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene.
SNHG3 lnc-OR10H5-1:1 U17HG, linc1343, ENSG00000242125 Small nucleolar RNA host gene 3
SNHG4 NONHSAT104072 U19H, ENSG00000200959 Small nucleolar RNA host gene 4
SNHG5 NONHSAT054526 U50HG, ENSG00000203875 Small nucleolar RNA host gene 5
SNHG6 lnc-TCF24-2:3 U87HG, ENSG00000245910 Small nucleolar RNA host gene 6
SPRY4-IT1 lnc-NDFIP1-3:1 AK024556, ENSG00000274721 SPRY4 intronic transcript 1 (non-protein coding)
SRA lnc-SRA1-1:1 SRA1, ENSG00000213523 Steroid receptor RNA Activator
TEA-ncRNAs NONHSAT035776 ENSG00000251002 T early alpha
Tmevpg1 ENST00000538665.1 ENSG00000255733 Theiler's murine encephalomyelitis virus persistence candidate gene 1
TncRNA NONHSAT022116 TSU TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA).
TUG1 NONHSAT084827 ENSG00000253352 taurine up-regulated gene 1 (Young (2005)).
UCA1 lnc-OR10H5-1:1 UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049 urothelial cancer associated 1 (non-protein coding)
UM9-5 NONHSAT095745 NCRNA00099, KCNIP4-IT1 KCNIP4 intronic transcript 1 (non-protein coding)
WT1-AS lnc-EIF3M-1:1 WIT1, ENSG00000183242 WT1 (Wilms' tumor 1) antisense transcript
Xist NONHSAT137541 ENSG00000229807 X inactive-specific transcript
Zeb2NAT NONHSAT074775 ZEB2AS, ENSG00000238057 Zeb2 natural antisense transcript
Zfas1 NONHSAT080206 Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410 Zinc finger antisense 1
Zfhx2as ENST00000554403.1 Zfh-5AS, ENSG00000157306 zinc finger homeobox 2, antisense
AK082072 lnc-RASA1-3:23,lnc-RASA1-3:25 linc-POLR3G-8, ENSG00000247828 N/A
Alpha 250/ Alpha 280 NONHSAT104559,lnc-NDST1-1:2 N/A N/A
ANRIL NONHSAT130421,lnc-C9orf53-2:1 CDKN2B-AS1, p15AS, ENSG00000240498 Antisense noncoding RNA in the INK4 locus
BACE1AS NONHSAT024403,lnc-RNF214-1:2 NCRNA00177, BACE1-AS; FJ573250 BACE1 antisense RNA
Beta-globin transcripts NONHSAT017676,NONHSAT017675,NONHSAT017674 N/A N/A
BX118339 lnc-PRL-6:2,lnc-PRL-6:1 Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678 N/A
CAR Intergenic 10 NONHSAT016928,lnc-FANK1-3:1 Intergenic10, CR611911, AK055628 Chromatin Associated RNA 10
Dio3os NONHSAT040032,NONHSAT040039 Dio3as, ENSG00000258498 DIO3 opposite strand/antisense RNA (head to head)
KDM5BAS1 ENST00000425295.1,ENST00000553157.1,ENST00000417262.1 Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288 N/A
LINC00570 ENST00000437795.1,ENST00000432665.1,ENST00000453100.1,ENST00000417473.2 ncRNA-a5,ENSG00000224177, long intergenic non-protein coding RNA 570
NEAT1 ENST00000501122.2,NONHSAT022111 MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532 Nuclear enriched abundant transcript 1.
ST7OT NONHSAT122926,NONHSAT122918,NONHSAT122914,NONHSAT122932 ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188 N/A
snaR lnc-BSPH1-1:1,lnc-BSPH1-2:1 small NF90-associated RNAs small NF90-associated RNAs
Y RNAs lnc-PDIA4-1:1 N/A N/A
PR antisense transcripts NONHSAT023851 N/A N/A