Difference between revisions of "Lnc-TPRA1-1:4"

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sequence = <dnaseq>AGGTGATGGGAACTGGGGGGAGCAAAGAGTGGGGAACTGGGCAGGGTCTGGCGGGGCTGTGGTGGGGGAAGCTGAAGCATGAAGGCTCGAGGAGCACACAGACACCTACACACAGCTCCGCGGGCATGTGGGGACCCAGACCCACCCCCACAGCAGACACCCCCACAGAGCACTCATGGCCCCCACAGAAATACACCCACACTCATCACAGCAAACCAAAACAATCACACGCCGGTACACAAACACACACACCCCCGCACCAATCCAGGCAGACACAAAGCTCACGGCGACAGGCAGATCTGATTCACACAGACACAGGCACAGGTGCTTCCTGATGCCACCCTCTCTTGGTCACGTGCCAGCACTTGGAGGGAGGAAAGTGCCTCACCAGGCTGAGATGCCCAAGGGACCCCCCAGGGAGGGAAAGCAGGACACACTGGGACAGTTGCTTCCAGCCCTGTCCACACCCTTGTGCCCATCAGGCCAAGCCACTGGTGAATATGCTGCAAAAAATATGCTGGAACTTCTATGAATACCACAGGGTGTGAGAAGAAAACATTAGAACTTCTATTTTGTACCTGTGTTACTCCACAACAAGAAAGCAATCAGCTTGATCAATGCCTACTGTAAAGACGGCACCGCCCTCCGGAGGTCCTTTCTCAGCCCTGGTGTTCGGACAGCCACATCCCCTCGCAGCAGGGGGAGGCCTGAAGCATAGAGGGGCCCATGCAGGTCTATTCTGTTTCAGCGAATTGCCTGGGAAATAATCCAGGATCCATTTCGTGTGGTCATCTTGTCTCCCTGGTCCCCTCCAGCCTTTCCTCATCTTTTGTGACCTGGTCACTCTGGAAGGGCGCTGGCCAGTTAGTCCACAGGATGGGCCTCCCCTGGGGCTTTTCTGATGCTTCCTTATGATGGCACTGGCATCCTGAGGGGGAGGACCACAGAGAGGAGGTGCTCCTCATCACACCACATGGGGGTCCATGCACCAGTGCCACTGCTTTCCAGGGCTCTTCACCTTCATCACTGGTGGAGGTGGCGTCTGCCAAGAAGCAGAAAGTTGAGGCTTAGAAGGTGCACGGCCCTACCTCTTCCGAGGTGCCCCTGCGGGCTGTCTACAGACCAGGCAGCACATGCCTGATAGCAGCTGCATAAGGAAAAGCAGGAGCCAGCTCGTGCACAGTGGCCTCAAGTGTGCACTGGGCATGTTCTCTGCCTCACCATCCCTGTGTGACAGATGAAGCTTCAAGGACCACAGAGGGCCAAGTGCAGGAGTAAGAGGCTGGCGTGCTGACAGTGGCCAAGGGCATTGGAGGGAAGGACCTGTCATCACTGGGCCAAGGAAGGAACTCCAGACTGCCTACTTCCAGAGGGCCTGCTGAGAACCCCAAAGAGCTCTCTCAACAAACACACCCACGAGTTCCAGGAGTGAGGCTGCAGGGAACAGCCTCACTCTCAGAGGGGATACAGAATTGTTCCACTGGACAAGGGCTGGGATCGTCATAGGATGCCGTTGGCCTGTGGTTTCCAACAGAGGTGCAGTTCATTGAACTGTGGTCTACAGTCCATTCTCTAACTTGGGGACCCTTGAAGAAGTGTGGAATCATGACAACAACCCTGTTGGGAGACACTATTATTCCCATCACATGGATGAGCACACGGAGGCAAAAGGAAGTTATATGATTGTCTGAGATCACCCAGTGAAGACTGTGTGGCTGGGAGTTGTCCCCAGTGTTATCTGCACGCTGCTTCCTTTTGATGCCTGGCCCTTCTTTATCAAAAGAAGCATTGGCAGAATCTGGGTGTTTATGGGTCAGCTCAAAAT</dnaseq>|
 
sequence = <dnaseq>AGGTGATGGGAACTGGGGGGAGCAAAGAGTGGGGAACTGGGCAGGGTCTGGCGGGGCTGTGGTGGGGGAAGCTGAAGCATGAAGGCTCGAGGAGCACACAGACACCTACACACAGCTCCGCGGGCATGTGGGGACCCAGACCCACCCCCACAGCAGACACCCCCACAGAGCACTCATGGCCCCCACAGAAATACACCCACACTCATCACAGCAAACCAAAACAATCACACGCCGGTACACAAACACACACACCCCCGCACCAATCCAGGCAGACACAAAGCTCACGGCGACAGGCAGATCTGATTCACACAGACACAGGCACAGGTGCTTCCTGATGCCACCCTCTCTTGGTCACGTGCCAGCACTTGGAGGGAGGAAAGTGCCTCACCAGGCTGAGATGCCCAAGGGACCCCCCAGGGAGGGAAAGCAGGACACACTGGGACAGTTGCTTCCAGCCCTGTCCACACCCTTGTGCCCATCAGGCCAAGCCACTGGTGAATATGCTGCAAAAAATATGCTGGAACTTCTATGAATACCACAGGGTGTGAGAAGAAAACATTAGAACTTCTATTTTGTACCTGTGTTACTCCACAACAAGAAAGCAATCAGCTTGATCAATGCCTACTGTAAAGACGGCACCGCCCTCCGGAGGTCCTTTCTCAGCCCTGGTGTTCGGACAGCCACATCCCCTCGCAGCAGGGGGAGGCCTGAAGCATAGAGGGGCCCATGCAGGTCTATTCTGTTTCAGCGAATTGCCTGGGAAATAATCCAGGATCCATTTCGTGTGGTCATCTTGTCTCCCTGGTCCCCTCCAGCCTTTCCTCATCTTTTGTGACCTGGTCACTCTGGAAGGGCGCTGGCCAGTTAGTCCACAGGATGGGCCTCCCCTGGGGCTTTTCTGATGCTTCCTTATGATGGCACTGGCATCCTGAGGGGGAGGACCACAGAGAGGAGGTGCTCCTCATCACACCACATGGGGGTCCATGCACCAGTGCCACTGCTTTCCAGGGCTCTTCACCTTCATCACTGGTGGAGGTGGCGTCTGCCAAGAAGCAGAAAGTTGAGGCTTAGAAGGTGCACGGCCCTACCTCTTCCGAGGTGCCCCTGCGGGCTGTCTACAGACCAGGCAGCACATGCCTGATAGCAGCTGCATAAGGAAAAGCAGGAGCCAGCTCGTGCACAGTGGCCTCAAGTGTGCACTGGGCATGTTCTCTGCCTCACCATCCCTGTGTGACAGATGAAGCTTCAAGGACCACAGAGGGCCAAGTGCAGGAGTAAGAGGCTGGCGTGCTGACAGTGGCCAAGGGCATTGGAGGGAAGGACCTGTCATCACTGGGCCAAGGAAGGAACTCCAGACTGCCTACTTCCAGAGGGCCTGCTGAGAACCCCAAAGAGCTCTCTCAACAAACACACCCACGAGTTCCAGGAGTGAGGCTGCAGGGAACAGCCTCACTCTCAGAGGGGATACAGAATTGTTCCACTGGACAAGGGCTGGGATCGTCATAGGATGCCGTTGGCCTGTGGTTTCCAACAGAGGTGCAGTTCATTGAACTGTGGTCTACAGTCCATTCTCTAACTTGGGGACCCTTGAAGAAGTGTGGAATCATGACAACAACCCTGTTGGGAGACACTATTATTCCCATCACATGGATGAGCACACGGAGGCAAAAGGAAGTTATATGATTGTCTGAGATCACCCAGTGAAGACTGTGTGGCTGGGAGTTGTCCCCAGTGTTATCTGCACGCTGCTTCCTTTTGATGCCTGGCCCTTCTTTATCAAAAGAAGCATTGGCAGAATCTGGGTGTTTATGGGTCAGCTCAAAAT</dnaseq>|
 
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[[Category:Intergenic]][[Category:lnc-TPRA1-1]][[Category:NONHSAG035995]]
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[[Category:Intergenic]][[Category:lnc-TPRA1-1]][[Category:NONHSAG035995]][[Category:Transcripts]]

Latest revision as of 05:33, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-TPRA1-1:4

Source

LNCipedia2.1

Same with

NONHSAT091723

Classification

intergenic

Length

1825 nt

Genomic location

chr3-:127199555..127255808

Exon number

6

Exons

127199555..127199997,127204404..127204542,127252420..127252612,127252960..127253249,127254029..127254306,127255327..127255808

Genome context

Sequence
000001 AGGTGATGGG AACTGGGGGG AGCAAAGAGT GGGGAACTGG GCAGGGTCTG GCGGGGCTGT GGTGGGGGAA GCTGAAGCAT 000080
000081 GAAGGCTCGA GGAGCACACA GACACCTACA CACAGCTCCG CGGGCATGTG GGGACCCAGA CCCACCCCCA CAGCAGACAC 000160
000161 CCCCACAGAG CACTCATGGC CCCCACAGAA ATACACCCAC ACTCATCACA GCAAACCAAA ACAATCACAC GCCGGTACAC 000240
000241 AAACACACAC ACCCCCGCAC CAATCCAGGC AGACACAAAG CTCACGGCGA CAGGCAGATC TGATTCACAC AGACACAGGC 000320
000321 ACAGGTGCTT CCTGATGCCA CCCTCTCTTG GTCACGTGCC AGCACTTGGA GGGAGGAAAG TGCCTCACCA GGCTGAGATG 000400
000401 CCCAAGGGAC CCCCCAGGGA GGGAAAGCAG GACACACTGG GACAGTTGCT TCCAGCCCTG TCCACACCCT TGTGCCCATC 000480
000481 AGGCCAAGCC ACTGGTGAAT ATGCTGCAAA AAATATGCTG GAACTTCTAT GAATACCACA GGGTGTGAGA AGAAAACATT 000560
000561 AGAACTTCTA TTTTGTACCT GTGTTACTCC ACAACAAGAA AGCAATCAGC TTGATCAATG CCTACTGTAA AGACGGCACC 000640
000641 GCCCTCCGGA GGTCCTTTCT CAGCCCTGGT GTTCGGACAG CCACATCCCC TCGCAGCAGG GGGAGGCCTG AAGCATAGAG 000720
000721 GGGCCCATGC AGGTCTATTC TGTTTCAGCG AATTGCCTGG GAAATAATCC AGGATCCATT TCGTGTGGTC ATCTTGTCTC 000800
000801 CCTGGTCCCC TCCAGCCTTT CCTCATCTTT TGTGACCTGG TCACTCTGGA AGGGCGCTGG CCAGTTAGTC CACAGGATGG 000880
000881 GCCTCCCCTG GGGCTTTTCT GATGCTTCCT TATGATGGCA CTGGCATCCT GAGGGGGAGG ACCACAGAGA GGAGGTGCTC 000960
000961 CTCATCACAC CACATGGGGG TCCATGCACC AGTGCCACTG CTTTCCAGGG CTCTTCACCT TCATCACTGG TGGAGGTGGC 001040
001041 GTCTGCCAAG AAGCAGAAAG TTGAGGCTTA GAAGGTGCAC GGCCCTACCT CTTCCGAGGT GCCCCTGCGG GCTGTCTACA 001120
001121 GACCAGGCAG CACATGCCTG ATAGCAGCTG CATAAGGAAA AGCAGGAGCC AGCTCGTGCA CAGTGGCCTC AAGTGTGCAC 001200
001201 TGGGCATGTT CTCTGCCTCA CCATCCCTGT GTGACAGATG AAGCTTCAAG GACCACAGAG GGCCAAGTGC AGGAGTAAGA 001280
001281 GGCTGGCGTG CTGACAGTGG CCAAGGGCAT TGGAGGGAAG GACCTGTCAT CACTGGGCCA AGGAAGGAAC TCCAGACTGC 001360
001361 CTACTTCCAG AGGGCCTGCT GAGAACCCCA AAGAGCTCTC TCAACAAACA CACCCACGAG TTCCAGGAGT GAGGCTGCAG 001440
001441 GGAACAGCCT CACTCTCAGA GGGGATACAG AATTGTTCCA CTGGACAAGG GCTGGGATCG TCATAGGATG CCGTTGGCCT 001520
001521 GTGGTTTCCA ACAGAGGTGC AGTTCATTGA ACTGTGGTCT ACAGTCCATT CTCTAACTTG GGGACCCTTG AAGAAGTGTG 001600
001601 GAATCATGAC AACAACCCTG TTGGGAGACA CTATTATTCC CATCACATGG ATGAGCACAC GGAGGCAAAA GGAAGTTATA 001680
001681 TGATTGTCTG AGATCACCCA GTGAAGACTG TGTGGCTGGG AGTTGTCCCC AGTGTTATCT GCACGCTGCT TCCTTTTGAT 001760
001761 GCCTGGCCCT TCTTTATCAA AAGAAGCATT GGCAGAATCT GGGTGTTTAT GGGTCAGCTC AAAAT
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