Lnc-SNAI1-1:1

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Annotated Information

Name

LOC100887755

Characteristics

Two exon, 600 nt transcript. Around 50 kb 3°Ø from SNAI1 on the opposite strand. In-vitro translation showed no sign of protein product.

Function

LncRNA regulates gene expression through SNAI1 dependant and independent mechanisms. Stimulates SNAI1 gene expression (in A549 cells) and like SNAI1 is required for cell migration. Stimulates Aurora-kinase A (AURKA) expression, a gene found ~6 megabases from LOC100887755 on chr20. SNAI1 does not appear to regulate AURKA and so LOC100887755 appears to regulate AURKA by a SNAI1 independent mechanism.

Expression

Expressed in A549 cells.

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-SNAI1-1:1

Source

LNCipedia2.1

Same with

,

Classification

intergenic

Length

600 nt

Genomic location

chr20+:48657243..48658166

Exon number

,

Exons

,

Genome context

Sequence
000001 CCGTTCCTGC CTCCCACAGA CACCTATTAA GTGCCTCCAG TTTTAGGAAC TGGGTATAGA TATGGCTGGG AACAAAATGG 000080
000081 AAGAAAACAA AAACAAAAAT CCCTGCCCTC ATGGTGCTGA CTCTCCTGTG GCAGAGACGG AGAAGATGAA CAGGGATTTT 000160
000161 ATACCAGGCG TCAGAAGGGA ACCAGTGCTA AAGAAAATGA AAACACCAGG CCGGGAGAGG CAGCTGGCAT GCGGGCCGTG 000240
000241 GTGGTTTTAC GTGGCCGATT TGAGAGAGTG AGACCCCTGG GGTCTTGGAG CCAGGCCTGG GAAAAGCTAC TTCACGTCAG 000320
000321 GCCAGGGGCT GTAGCCCTGG CAACCTCCAC TCCGCCTGGA AATCCTCCAC CTCGGGGCCT CTCTTTGCCC AGACCTGGCC 000400
000401 CAGGAGGAGC ACATGGGAGC CGGGACCTTC CCAACAATCC TTGCCGTTGG CTCCACAAAC CTCAGCCAGT CCTGCAACCT 000480
000481 GGGATGCCTT TTCCACCAGG ATGCCTGCTA CTGTCACTGT TGTCATTAGA TAATTAATGA ACTATAATTA GAAATCATAT 000560
000561 CAATAAAATT TCACAGTCTA AGGCTGTTGA AATAGGAAAA
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