Difference between revisions of "Lnc-FANK1-3:1"

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==Annotated Information==
 
==Annotated Information==
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===Name===
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CAR10: Chromatin Associated RNA 10
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===Characteristics===
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Positioned between 3' ends of of FANK1 (fibronectin) and ADAM12 (ADAM metallopeptidase domain 12) genes, with an overlap of a few hundred base pairs with ADAM12.
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===Function===
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Positively regulates gene expression of FANK1 and ADAM12 neighboring genes through modulating the chromatin structure in cis, as siRNA knock-down of the Intergenic10 ncRNA results in reduced expression of both FANK1 and ADAM12 mRNAs, with a significant decrease in the level of active chromatin mark H3K4me2 on FANK1 and ADAM12 promoters<br /> Knock-down of the ncRNA had no effect on the expression of two tested distal genes, UROS and DOCK1.<br /> Note: Despite its overlap with the 3' end of ADAM12, Intergenic 10 is not simply an Adam12 3'UTR, as siRNA knockdown of Adam12 failed to decrease FANK1 expression unlike knockdown of CAR Intergenic 10.
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===Expression===
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CAR Intergenic 10, ADAM12 and FANK1 are co-expressed in different tissues, including placenta, brain and a human skin fibroblast (HF) cell line.<br /> CAR Intergenic 10 was most highly expressed in HF cells and very lowly expressed in brain, with placenta in-between.
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===Conservation===
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Please input conservation information here.
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===Misc===
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Please input misc information here.
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===Transcriptomic Nomeclature===
 
===Transcriptomic Nomeclature===
 
Please input transcriptomic nomeclature information here.
 
Please input transcriptomic nomeclature information here.
 
===Function===
 
Please input function information here.
 
  
 
===Regulation===
 
===Regulation===
 
Please input regulation information here.
 
Please input regulation information here.
 
===Expression===
 
Please input expression information here.
 
  
 
===Allelic Information and Variation===
 
===Allelic Information and Variation===
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[[Category:Antisense]]
 
[[Category:Antisense]]
 
{{lncrnadb|
 
tID = Lnc-FANK1-3:1 |
 
ltID = CAR Intergenic 10|
 
ann = <tab class=wikitable sep=tab head=top>
 
Section Description
 
ID CAR Intergenic 10
 
Name CAR10: Chromatin Associated RNA 10
 
Characteristics Positioned between 3' ends of of FANK1 (fibronectin) and ADAM12 (ADAM metallopeptidase domain 12) genes, with an overlap of a few hundred base pairs with ADAM12.
 
Expression CAR Intergenic 10, ADAM12 and FANK1 are co-expressed in different tissues, including placenta, brain and a human skin fibroblast (HF) cell line.<br /> CAR Intergenic 10 was most highly expressed in HF cells and very lowly expressed in brain, with placenta in-between.
 
Function Positively regulates gene expression of FANK1 and ADAM12 neighboring genes through modulating the chromatin structure in cis, as siRNA knock-down of the Intergenic10 ncRNA results in reduced expression of both FANK1 and ADAM12 mRNAs, with a significant decrease in the level of active chromatin mark H3K4me2 on FANK1 and ADAM12 promoters<br /> Knock-down of the ncRNA had no effect on the expression of two tested distal genes, UROS and DOCK1.<br /> Note: Despite its overlap with the 3' end of ADAM12, Intergenic 10 is not simply an Adam12 3'UTR, as siRNA knockdown of Adam12 failed to decrease FANK1 expression unlike knockdown of CAR Intergenic 10.
 
</tab>|
 
}}
 

Revision as of 02:15, 11 October 2014

Please input one-sentence summary here.

Annotated Information

Name

CAR10: Chromatin Associated RNA 10

Characteristics

Positioned between 3' ends of of FANK1 (fibronectin) and ADAM12 (ADAM metallopeptidase domain 12) genes, with an overlap of a few hundred base pairs with ADAM12.

Function

Positively regulates gene expression of FANK1 and ADAM12 neighboring genes through modulating the chromatin structure in cis, as siRNA knock-down of the Intergenic10 ncRNA results in reduced expression of both FANK1 and ADAM12 mRNAs, with a significant decrease in the level of active chromatin mark H3K4me2 on FANK1 and ADAM12 promoters
Knock-down of the ncRNA had no effect on the expression of two tested distal genes, UROS and DOCK1.
Note: Despite its overlap with the 3' end of ADAM12, Intergenic 10 is not simply an Adam12 3'UTR, as siRNA knockdown of Adam12 failed to decrease FANK1 expression unlike knockdown of CAR Intergenic 10.

Expression

CAR Intergenic 10, ADAM12 and FANK1 are co-expressed in different tissues, including placenta, brain and a human skin fibroblast (HF) cell line.
CAR Intergenic 10 was most highly expressed in HF cells and very lowly expressed in brain, with placenta in-between.

Conservation

Please input conservation information here.

Misc

Please input misc information here.

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Regulation

Please input regulation information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-FANK1-3:1

Source

LNCipedia2.1

Same with

,

Classification

antisense

Length

65 nt

Genomic location

chr10+:127703096..127703161

Exon number

1

Exons

127703096..127703161

Genome context

Sequence
000001 TCCACGCTGT GAAATGTAAC CTCCTGTGTG TATTTCCACA ATGGAGAATG TTAGGCTTCG TTTCC
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