Difference between revisions of "LINC02474"

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===Expression===
 
===Expression===
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It is differentially expressed in gastric cancer tissues.<ref name="ref1" />
  
 
===Disease===
 
===Disease===

Latest revision as of 05:06, 26 December 2018

LINC02474, long intergenic non-protein coding RNA 2474, disregulated in gastric cancer.

Annotated Information

Name

LINC02474: long intergenic non-protein coding RNA 2474 (HGNC:53417)

Alias

RP11-400N13.2 [1]

Characteristics

LINC02474 is a long non-protein coding RNA located at chromosome position 1q41. [1]

Function

Please input information here.

Regulation

According to the findings of the transcriptome sequencing and bioinformatics analyses, RP11-400N13.2 was upregulated however, the RT-qPCR validation confirmed that RP11-400N13.2 was downregulated in GC tissues compared with normal adjacent tissues.[1]

Expression

Experiment Forward primer Reverse primer
RT-qPCR 5'-CCCCTGTCCTCCTGCTCTT- 3' 5'-CGGGCAGTGTCAGTCTTCA- 3'[1]

It is differentially expressed in gastric cancer tissues.[1]

Disease

Gastric cancer [1]

Labs working on this lncRNA

Department of Laboratory Medicine, Shanghai Shuguang Hospital Affiliated with Shanghai University of TCM, Shanghai 200021, P.R. China

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 Wang Y & Zhang J. Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses[J]. Molecular medicine reports. 2018, 17(6):8189-8195.

Sequence

>ENST00000441160.1, Homo sapiens lincRNA LINC02474 cdna

000001 CCTCCTGCTC TTTGCTCCGT GAGAAAGATC CACCTACGAC CTCAGGTCCT CAGACCGACT AGCCCAAGAA ACATCTCACC 000080
000081 AATTTCAAAT CTGACCTTTG CAAGAGGGTC CGAGACATTT GCATCATCAT TCAGTGAGAC CTGTAAACAC AGCATCTGCC 000160
000161 TTTGACCACA TCCATCTGGA AGAACCTGAG AGATAATCCA TTTTATGAAA TTTTCCCTAC CCTGAAATGG GAGAATGGAA 000240
000241 CCAAGTTCTG GAGAAGCTCC TGGGCTGCTA GAACTGGGTG CTGGAGAAAC CAGGTATGCT GAAGGAGGTT GATGAAACAA 000320
000321 ACACACTGTA ATCAGAAAGA GAATCCCCTT CCTCCTGCAG TATTCCACCA ATAACTTCTA CTGACAAAGC TTAACATTAT 000400
000401 GTCAGCTGAC TTAGAAGAAA TATTTGCAGG GTCCAGCTGC ATTATCCACA GAATAGTGAA TGAAGGATGG AGTTGGAGCT 000480
000481 GAAAGAAAAT AAGCTGACAA CTGGCACAGT AAAGTATTTG GCTCCACAGT CTCTACGTAT ACCCTTCTAT ACATATTTAC 000560
000561 ACTTCTGTGC AACAATGAAA CAACTCTATA TTTCACCTAA AAAGATACAG CTGTCTTAAA ATGTAAAGAA GTCCTCAGCT 000640
000641 TTGCTTTACA GTGAGGAGAT GCACAGTCTC AGTTGTCATT ATTTTCATCA TTGGCTATAT ATTAAATATT TCTAAAATCC 000720
000721 TGTCACAGTC TCTGTTACCT AAAAATAAAT TTATAAAATT AACCCACAAG AACTTATATG TAAAATAAAA ATAAGAAGAA 000800
000801 GAAAATGTTA GCTTATATGA GGGGTCTTCA AAAAGTTCAC GGAAAATGTG TATTTTTTAT ATATATAAAA ATAGATGTGT 000880
000881 GGATTTCAAA CATTTTCGGC ACAAAAGTAA ACTCGTGCTA ACTTGTTATA ACATGCCTGA ACAGAATCTA ATTTGAAGCA 000960
000961 CTGAGAAGGA TAAGGCATCC ATTTGAAAAG GACTCCTATA TTGCAACATG AATTCTGCTA AAATTGAAGC AAGAACAAAC 001040
001041 ATCAAATTTA TGATGAAGTT TGGGTAGAAG AACGATGAAA TTAGTGACGC TTTATAAAAA GTTTATTGGG ACAATACCCC 001120
001121 AAATGAATCA GCAGTTTAAA AATGGATA