Difference between revisions of "LINC01705"

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Latest revision as of 02:53, 26 December 2018

LINC01705, long intergenic non-protein coding RNA 1705 serves an important role in the carcinogenesis of gastric cancer.

Annotated Information

Name

LINC01705:long intergenic non-protein coding RNA 1705 (HGNC:52493)

Alias

RP11-400N13.3 (HGNC:52493)

Characteristics

LINC01705 or RP11-400N13.3 is a long non-protein coding gene that is located at chromosome 1q41.[1]

Function

RP11-400N13.3 may have a role in the progression of gastric cancer. It is predicted to regulate >10 target genes, including collagen type I a 1 (COL1A1), COL1A2, and arachidonate 15-lipoxygenase (ALOX15).[1]

Regulation

Please input information here.

Expression

Experiment Forward primer Reverse primer
RT-qPCR 5'-GCAGATGGCAAAGGATAAAGC- 3' 5'-GGTGATATACGATGCAACGGTG- 3'[1]

It is differentially expressed in gastric cancer tissues.[1]

Disease

Gastric cancer [1]

Labs working on this lncRNA

Department of Laboratory Medicine, Shanghai Shuguang Hospital Affiliated with Shanghai University of TCM, Shanghai 200021, P.R. China

References

  1. 1.0 1.1 1.2 1.3 1.4 Wang Y & Zhang J. Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses[J]. Molecular medicine reports. 2018, 17(6):8189-8195.

Sequence

>ENST00000438158.1, Homo sapiens lincRNA LINC01705 cdna

000001 GCTGCAATCC ATGTAAGATG TGACTTGTTC CTCCTTGCCT TCTGCCATGA TTGTGAGGCC TCCACAGCCA TGCGGAACTG 000080
000081 TTGAAATACA CACTACCTGA AGCTGGATAA CTCATGAACT CTGTTGACAA TTATATTCTT TGTCTTTTTA ATTAACTCAT 000160
000161 TTGGAGTTGG TGTCCTGAGG ACCTAAGCCT AAGAATCTTC AAGATGGAAG AGTAGAGTGA ACAATGAATG AGCCAGAGGG 000240
000241 CTCTTGTCCT CTGTGTGCAG CTCTGGGCAG CCAGCAGGTG GATATGGGAC TTGGCCTGCT GGAGGGGCCC TGGCAAGAGG 000320
000321 AGCTGGCAGG AGCAGATGGC AAAGGATAAA GCGCTCCCTT GTTGGTGTCC CCACAGTCCA GGCTGGTGCT GATGCCGTCC 000400
000401 TGCCGTCCTG CATCAGAGCC ACTCATGCCC GTGTGCGCAC TCTTTGTCGG GGTCTGACAC CGTTGCATCG TATATCACCT 000480
000481 GTGTTGTCAT GGTCAGTGCT CAACAAATGC CCCTACTGAT TCAAGTATAT GAGCAAGTCA AATAAAAAAA TAATATGGCC 000560
000561 GG