LINC00961
Contents
Annotated Information
Approved Symbol
LINC00961
Approved Name
long intergenic non-protein coding RNA 961
Previous Symbols
_
Synonyms
_
Chromosome
9p13.3
RefSeq ID
NR_024283
OMIM ID
_
Ensembl ID
ENSG00000235387
pubmed IDs
27193186
Sequence
>gi|210147449|ref|NR_024283.1| Homo sapiens long intergenic non-protein coding RNA 961 (LINC00961), long non-coding RNA
000001 AACCAGGACA GAGGCTGCAG CACCCAGGGA GGAACGCCGT GGTCCCTGGG ACGGCCACCA GGCCAGGAGG CTGCAGCACC 000080
000081 AGGGAATCTG TGCTCACGTC TTCCAGGACA GTGCTTCTTC TAGAAGCTGA CATGGAGCTG ACCACAGCTC TTGGAGGCAT 000160
000161 GGCCTGAGGC TTAGAAAATA GACAGAGATC ATCTGAGATT TCAGCAGTGG GGCCACGTGG CAGCGCCCGA AGGCCTGGAG 000240
000241 CAGGAGCGAC CCAGGGACTC AGAGCAGCAT CTTCTTAGGA GACGGAAGGA GAGCCGCCGG AGGAGCACGG GGCACCTGCG 000320
000321 ATCGCGAAGA GCCTCCTGTT CTGGATGGGA GCGAAGGCTC CGAGAGGACC TAAGGTTGCT CAGTGGGCCA TGGAAACGGC 000400
000401 AGTGATTGGG GTGGTGGTGG TGCTGTTCGT GGTGACTGTG GCCATCACCT GCGTCCTCTG CTGCTTCAGC TGTGACTCAA 000480
000481 GGGCCCAGGA TCCTCAGGGG GGTCCTGGCC GCAGCTTCAC GGTGGCCACG TTTCGCCAGG AAGCTTCTCT CTTCACGGGG 000560
000561 CCTGTTCGCC ATGCCCAGCC AGTGCCAAGT GCCCAGGACT TCTGGACCTT CATGTGACGC CCGAGTCCCC AGGATTTGCT 000640
000641 GTGCTGATGG GTCAGACTCA CCCGCTCCTC AGCAAGCCTT CCCTGGCCTT CCCCTCCTCC CAGGGCCTTC TCCCTGTCCT 000720
000721 TCCCCTCCAG TAACCTGTGA ACTTCCCGTC TCCTCCCATT CCAGCCTTCT GTGCCCTCCA GCCTCAGGGA TCCTTGTTAT 000800
000801 TGGGACAGCC CAGCTGGGGT TGACCCACAG GATGGGGCTT AGGAGAGCTC TGAGGAGTGA GTGAACAGAC AGCGCCGGAG 000880
000881 TGCACGGTGG GCCGGCTCTG CTGATCTACA CCAGGAACTG AAATATCACT GGAATTTATT GTAAACGGTG TGCCTATGAT 000960
000961 GCTGGTTCTG TTGCCACCTG GGCACGCAGC ACCCTCAAGT GGACATTTCT AGAAACCGCT TCTTACTTGC TCCTAATTGA 001040
001041 TTACTTTTGC ACATTGCACA GAACCCAACC TCGAGGCCTG CTCCCTGCCA GTTGCCTGAA ATCAGCCCTG AAATTCTGAA 001120
001121 ACCAAAGAGC TGCTTCCTGA GAACAAGTTA TTTACCTTAG AATTGAAAAT GTATATCCTT TTATGGGCCT TTCCAAATCT 001200
001201 GATTAGAAAA ACCACAAAAG GAAACAGAAG AGAAAATAAG AGCCACAGAA AGTACAATAT GTTTTATTAA CAGGAAAGCC 001280
001281 AGAAATAAGA TATTTTAAAC ATATTTTTAA TGAGACTTTA TTGCTATATT CCAACAGGTC ACTCCTATTC TTAGAGAATG 001360
001361 TGAATGACTT GTGTCACTTC GGAGTGACAG AAAAATCAGG AACTGAAAGA TAATTCCAGA CAAGTTAAAA TGTTATGTTA 001440
001441 CATTCAAAGC TCTTGTTTTC ATCACAAATA AGGGGATATT CAGTTTTTAT TAACAGAAAA CCCATTCTCC CATGGCCATG 001520
001521 GAATAAATGC CATGCTATAT TTAAGG
000081 AGGGAATCTG TGCTCACGTC TTCCAGGACA GTGCTTCTTC TAGAAGCTGA CATGGAGCTG ACCACAGCTC TTGGAGGCAT 000160
000161 GGCCTGAGGC TTAGAAAATA GACAGAGATC ATCTGAGATT TCAGCAGTGG GGCCACGTGG CAGCGCCCGA AGGCCTGGAG 000240
000241 CAGGAGCGAC CCAGGGACTC AGAGCAGCAT CTTCTTAGGA GACGGAAGGA GAGCCGCCGG AGGAGCACGG GGCACCTGCG 000320
000321 ATCGCGAAGA GCCTCCTGTT CTGGATGGGA GCGAAGGCTC CGAGAGGACC TAAGGTTGCT CAGTGGGCCA TGGAAACGGC 000400
000401 AGTGATTGGG GTGGTGGTGG TGCTGTTCGT GGTGACTGTG GCCATCACCT GCGTCCTCTG CTGCTTCAGC TGTGACTCAA 000480
000481 GGGCCCAGGA TCCTCAGGGG GGTCCTGGCC GCAGCTTCAC GGTGGCCACG TTTCGCCAGG AAGCTTCTCT CTTCACGGGG 000560
000561 CCTGTTCGCC ATGCCCAGCC AGTGCCAAGT GCCCAGGACT TCTGGACCTT CATGTGACGC CCGAGTCCCC AGGATTTGCT 000640
000641 GTGCTGATGG GTCAGACTCA CCCGCTCCTC AGCAAGCCTT CCCTGGCCTT CCCCTCCTCC CAGGGCCTTC TCCCTGTCCT 000720
000721 TCCCCTCCAG TAACCTGTGA ACTTCCCGTC TCCTCCCATT CCAGCCTTCT GTGCCCTCCA GCCTCAGGGA TCCTTGTTAT 000800
000801 TGGGACAGCC CAGCTGGGGT TGACCCACAG GATGGGGCTT AGGAGAGCTC TGAGGAGTGA GTGAACAGAC AGCGCCGGAG 000880
000881 TGCACGGTGG GCCGGCTCTG CTGATCTACA CCAGGAACTG AAATATCACT GGAATTTATT GTAAACGGTG TGCCTATGAT 000960
000961 GCTGGTTCTG TTGCCACCTG GGCACGCAGC ACCCTCAAGT GGACATTTCT AGAAACCGCT TCTTACTTGC TCCTAATTGA 001040
001041 TTACTTTTGC ACATTGCACA GAACCCAACC TCGAGGCCTG CTCCCTGCCA GTTGCCTGAA ATCAGCCCTG AAATTCTGAA 001120
001121 ACCAAAGAGC TGCTTCCTGA GAACAAGTTA TTTACCTTAG AATTGAAAAT GTATATCCTT TTATGGGCCT TTCCAAATCT 001200
001201 GATTAGAAAA ACCACAAAAG GAAACAGAAG AGAAAATAAG AGCCACAGAA AGTACAATAT GTTTTATTAA CAGGAAAGCC 001280
001281 AGAAATAAGA TATTTTAAAC ATATTTTTAA TGAGACTTTA TTGCTATATT CCAACAGGTC ACTCCTATTC TTAGAGAATG 001360
001361 TGAATGACTT GTGTCACTTC GGAGTGACAG AAAAATCAGG AACTGAAAGA TAATTCCAGA CAAGTTAAAA TGTTATGTTA 001440
001441 CATTCAAAGC TCTTGTTTTC ATCACAAATA AGGGGATATT CAGTTTTTAT TAACAGAAAA CCCATTCTCC CATGGCCATG 001520
001521 GAATAAATGC CATGCTATAT TTAAGG
Predicted Small Protein
Name | LINC00961_smProtein_344:616 |
Length | 90 |
Molecular weight | 9632.1163 |
Aromaticity | 0.1 |
Instability index | 44.0366666667 |
Isoelectric point | 8.50531005859 |
Runs | 11 |
Runs residual | 0.0176366843034 |
Runs probability | 0.0513481395834 |
Amino acid sequence | MGAKAPRGPKVAQWAMETAVIGVVVVLFVVTVAITCVLCCFSCDSRAQDPQGGPGRSFTV ATFRQEASLFTGPVRHAQPVPSAQDFWTFM |
Secondary structure | LLLLLLLLLHHHHHHHHHLEEEEEEEEEEEEEEEEEEEEEEELLLLLLLLLLLLLLEEEE EEEEEEEEELLLLEEELLLLLLHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo oooooooooooooooooooooooooooooo |