LINC00536
Revision as of 12:16, 23 June 2016 by Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== LINC00536 ===Approved Name=== long intergenic non-protein coding RNA 536 ===Previous Symbols=== _ ===Synonyms=== _ ===Chromosom...")
Contents
Annotated Information
Approved Symbol
LINC00536
Approved Name
long intergenic non-protein coding RNA 536
Previous Symbols
_
Synonyms
_
Chromosome
8q23.3
RefSeq ID
NR_046215
OMIM ID
_
Ensembl ID
ENSG00000249917
pubmed IDs
24886451
Sequence
>gi|374349214|ref|NR_046215.1| Homo sapiens long intergenic non-protein coding RNA 536 (LINC00536), long non-coding RNA
000001 GGCTGTGGCC AAGTGATTGT TGCTGAACTT ACCTGTGTCG AAAGGTCAGC CTTCCAGTGC TAAGGCTGGG CACAGGCGCT 000080
000081 AAGGCAAATT GGATTGTGAA TGGAGGCCCT GAGGCATGTT CTGCACTTTG CAACTGGTCT GGCAGGCTCC ACTCCTCCAC 000160
000161 CTTCTAAGTC TGCCACAGGC ATGGGAAACA CCTGGGCAGC GACAAAGGTG GTTAAGGCAG CTTCGCCAAG AAGAGGAGCC 000240
000241 AAGATGGTTA ACTAGACGTA GCCAGGAGGA ACATCTCCCA CCAAGAGACT GAGCTGTCAG GAAGACTGGT ACATTCTGAG 000320
000321 CAGATCTTTG GAGGGAAGGC ATTGAGAGTG GATGGAAGGA TGATGCAGAC ACTGGGCTGA AGAGGAAGGA AGCTGGGAAC 000400
000401 CCTGTACAGG ACTACCGAGC ACCAGGACTT GTTTCTGGCC CCCTGCAACT CCTGGGAAAG GGAGAACTCC TCCAGTGCTC 000480
000481 TCAAGTGTTT TACAGACCAC TAATTATTAA ATGTGGAAGC TCTGGAGCAG AGAACCTTTC AACTGAAATG ATGACAAACG 000560
000561 ATGCTGGCTG AGGAGAGTCA GACCTGAAAA GTTAGGAATC CCTAAAATGA CGTCAACCTA TAATTCCTAT TACAGAGCTC 000640
000641 TGATTTCTAC TGATCGTTTT AGGAACCATA TCTACTATGT GAGAAAAGCT GCTGGTGGGC CTAATTTAGA TGAAAAGCAG 000720
000721 AAAGGCCTTA AAAAAGAAAT GGGAAAGGAA TATACAGAAG CAAGAAGATG ATTGAAAAAA GATGGCAATT CATGTACTTG 000800
000801 TTGAACACCA GTTCTGAGCT GCAGAGCAGG AGGCACAAGA CGTAAACAAA AAAGTCTCTG TTACGGTCCT AAAGAAGCCA 000880
000881 ATCATCTAGA GAAATGTATG CACAGCAGGT CCAGCAGAAT GGGCTTTGCG CTGATGAGGG AAGCAAGAGG AGAGCATGGC 000960
000961 CTGGGAAAGG AGATGATCAG GCTCACTTCC CATTTCTCTG TGGAAGAACC GTGGCAAACA CAGAGTCAAC TCACAACGTT 001040
001041 CATTGGAATT TTTCCCACTT GACTCCTTCG CAAGTTGGAA TAAGGAGTTT GGAAAGGGAG GATTTCTTCA TATAAAAATG 001120
001121 GTCTGGGTAT ATCCACGCAA AACTAAAGGG AGTGGAAGAG ACCCTAGGTC TACACATTTG ATGGGATAGA TCCTTCGGGC 001200
001201 TCAGCCTCAC CTGCAGGTAC TGAAGGAAGC CTTAGTCTGC TATACAGAGC ACTCTGCACC ATGGGGAGAA GATCAATATG 001280
001281 CTAAACTTGG GTACTGGGCC TAAATCTTAC GAAGTGACCT CAAACCTAGG AAGGGTAGTT TCATCAGAAA AGATCCTACA 001360
001361 ACCTTCTATC TGAAGAGCAT GAATAGCTGC TGCTTTTTTG GAGTTGGGGC CTTTCATTCA CCATGAAGAT ACTGCATTGT 001440
001441 GGCACAGTCC TTGAAGAGAC AAGTAGAGAC AGGGTTTCAC CGTGGTGACA GGCTGGTCTC GAACTCCTGA CCTCAAGTGA 001520
001521 TCCGTCTGCC TCAGCATCCC AAAGTGCTGG GATTACAGGC ACATTGAAGA ATCAGAAGAT GTTTTCCCCC TGTGTTTTTG 001600
001601 ATGGAAGGAA GAAAGCAGGA TTTGCCAGGA TGCATTCTGC ATCCAAGAAC ATGAACGGAA ATGAGCCACA GAAAATCTGG 001680
001681 AGTGATGGCA GCTGTTGTGA GAGGTGGCAA TGAAATGGAT TTCTCAGACA CAGAGATGTG GTCTCCCACC AGGTCCCATT 001760
001761 TCAGTGTATG GTTTCTTGGA TTTCTCTGCC AGCTTCAAAC AGTGCTTCTG ATAAAGTGAT TTATGAAGTA ATGGGAAATG 001840
001841 TATGTTGACT CATGGAGTAA CAATGAGGAA ATAGGCATTG GCACCAGGAC TCTGTTGACA TCAGGACTTC AGTGAGGGGG 001920
001921 AAATTCTGCA GAGATGTGCA TAAACTCATC GCAGCTGCTC TACCATCTGA CAACCTGATG GTCATGGGGG ACCTCAATGC 002000
002001 ACGTGTTGGT GGTAGTGCCA AAATGTGGAA GAAAATTATT GGACCACAGA GGATTAGTCT CTTCCTGCAT GGTGAACAGA 002080
002081 CCGAGCAATA ACTTGTAATC ACAGACAACA GCGTCAATCA TATAAGTTAG GAGAAAAATA TCATGGATAT GCCACAAATC 002160
002161 AAAAACAGTG ACATCACACC CATTCTGCCA TTGTTTCACA GCAGAATGCC AACAAGCTGA CAATCTGAAT GGGTCTGAGA 002240
002241 TCGTTACCCA ATATGCTTCA AATCAGGAGA ACATACGGCA ACACTCATTG ACTTACATAT TCTGGGTAAG ACACAGAGCA 002320
002321 AAGAACTGCA ACAGAGGTTA AAGTTTCAGA AAGAGAAGAA GCAGCCTTCA CTATATCAGA CAGATGAATC CAGCTCCAAT 002400
002401 CAATAATTGA GTTTTGGATT GGAGGAAAGA ATATTTGGAC ATTAAAGAAA ATAAGCAGAG AGTGCCTAAT CTCTTCAATT 002480
002481 CTCAAGATCA TGCTTAACAT GACCACATTA ATTACAGCAG AGTGAGACAG GCACAGAAGA GGAGGGACTT GGAACCTGAC 002560
002561 CTAAATACAG AAGTGTCAAG CCTAGAAGGA AGTAAAATTT GGAAGAAAGT ACATGGCATA TGAAAGAAAA ATAACAACCC 002640
002641 AACAACATCT GACATTATGG AATACTTAAA TAAAAATAAA ATTTTAGATT CA
000081 AAGGCAAATT GGATTGTGAA TGGAGGCCCT GAGGCATGTT CTGCACTTTG CAACTGGTCT GGCAGGCTCC ACTCCTCCAC 000160
000161 CTTCTAAGTC TGCCACAGGC ATGGGAAACA CCTGGGCAGC GACAAAGGTG GTTAAGGCAG CTTCGCCAAG AAGAGGAGCC 000240
000241 AAGATGGTTA ACTAGACGTA GCCAGGAGGA ACATCTCCCA CCAAGAGACT GAGCTGTCAG GAAGACTGGT ACATTCTGAG 000320
000321 CAGATCTTTG GAGGGAAGGC ATTGAGAGTG GATGGAAGGA TGATGCAGAC ACTGGGCTGA AGAGGAAGGA AGCTGGGAAC 000400
000401 CCTGTACAGG ACTACCGAGC ACCAGGACTT GTTTCTGGCC CCCTGCAACT CCTGGGAAAG GGAGAACTCC TCCAGTGCTC 000480
000481 TCAAGTGTTT TACAGACCAC TAATTATTAA ATGTGGAAGC TCTGGAGCAG AGAACCTTTC AACTGAAATG ATGACAAACG 000560
000561 ATGCTGGCTG AGGAGAGTCA GACCTGAAAA GTTAGGAATC CCTAAAATGA CGTCAACCTA TAATTCCTAT TACAGAGCTC 000640
000641 TGATTTCTAC TGATCGTTTT AGGAACCATA TCTACTATGT GAGAAAAGCT GCTGGTGGGC CTAATTTAGA TGAAAAGCAG 000720
000721 AAAGGCCTTA AAAAAGAAAT GGGAAAGGAA TATACAGAAG CAAGAAGATG ATTGAAAAAA GATGGCAATT CATGTACTTG 000800
000801 TTGAACACCA GTTCTGAGCT GCAGAGCAGG AGGCACAAGA CGTAAACAAA AAAGTCTCTG TTACGGTCCT AAAGAAGCCA 000880
000881 ATCATCTAGA GAAATGTATG CACAGCAGGT CCAGCAGAAT GGGCTTTGCG CTGATGAGGG AAGCAAGAGG AGAGCATGGC 000960
000961 CTGGGAAAGG AGATGATCAG GCTCACTTCC CATTTCTCTG TGGAAGAACC GTGGCAAACA CAGAGTCAAC TCACAACGTT 001040
001041 CATTGGAATT TTTCCCACTT GACTCCTTCG CAAGTTGGAA TAAGGAGTTT GGAAAGGGAG GATTTCTTCA TATAAAAATG 001120
001121 GTCTGGGTAT ATCCACGCAA AACTAAAGGG AGTGGAAGAG ACCCTAGGTC TACACATTTG ATGGGATAGA TCCTTCGGGC 001200
001201 TCAGCCTCAC CTGCAGGTAC TGAAGGAAGC CTTAGTCTGC TATACAGAGC ACTCTGCACC ATGGGGAGAA GATCAATATG 001280
001281 CTAAACTTGG GTACTGGGCC TAAATCTTAC GAAGTGACCT CAAACCTAGG AAGGGTAGTT TCATCAGAAA AGATCCTACA 001360
001361 ACCTTCTATC TGAAGAGCAT GAATAGCTGC TGCTTTTTTG GAGTTGGGGC CTTTCATTCA CCATGAAGAT ACTGCATTGT 001440
001441 GGCACAGTCC TTGAAGAGAC AAGTAGAGAC AGGGTTTCAC CGTGGTGACA GGCTGGTCTC GAACTCCTGA CCTCAAGTGA 001520
001521 TCCGTCTGCC TCAGCATCCC AAAGTGCTGG GATTACAGGC ACATTGAAGA ATCAGAAGAT GTTTTCCCCC TGTGTTTTTG 001600
001601 ATGGAAGGAA GAAAGCAGGA TTTGCCAGGA TGCATTCTGC ATCCAAGAAC ATGAACGGAA ATGAGCCACA GAAAATCTGG 001680
001681 AGTGATGGCA GCTGTTGTGA GAGGTGGCAA TGAAATGGAT TTCTCAGACA CAGAGATGTG GTCTCCCACC AGGTCCCATT 001760
001761 TCAGTGTATG GTTTCTTGGA TTTCTCTGCC AGCTTCAAAC AGTGCTTCTG ATAAAGTGAT TTATGAAGTA ATGGGAAATG 001840
001841 TATGTTGACT CATGGAGTAA CAATGAGGAA ATAGGCATTG GCACCAGGAC TCTGTTGACA TCAGGACTTC AGTGAGGGGG 001920
001921 AAATTCTGCA GAGATGTGCA TAAACTCATC GCAGCTGCTC TACCATCTGA CAACCTGATG GTCATGGGGG ACCTCAATGC 002000
002001 ACGTGTTGGT GGTAGTGCCA AAATGTGGAA GAAAATTATT GGACCACAGA GGATTAGTCT CTTCCTGCAT GGTGAACAGA 002080
002081 CCGAGCAATA ACTTGTAATC ACAGACAACA GCGTCAATCA TATAAGTTAG GAGAAAAATA TCATGGATAT GCCACAAATC 002160
002161 AAAAACAGTG ACATCACACC CATTCTGCCA TTGTTTCACA GCAGAATGCC AACAAGCTGA CAATCTGAAT GGGTCTGAGA 002240
002241 TCGTTACCCA ATATGCTTCA AATCAGGAGA ACATACGGCA ACACTCATTG ACTTACATAT TCTGGGTAAG ACACAGAGCA 002320
002321 AAGAACTGCA ACAGAGGTTA AAGTTTCAGA AAGAGAAGAA GCAGCCTTCA CTATATCAGA CAGATGAATC CAGCTCCAAT 002400
002401 CAATAATTGA GTTTTGGATT GGAGGAAAGA ATATTTGGAC ATTAAAGAAA ATAAGCAGAG AGTGCCTAAT CTCTTCAATT 002480
002481 CTCAAGATCA TGCTTAACAT GACCACATTA ATTACAGCAG AGTGAGACAG GCACAGAAGA GGAGGGACTT GGAACCTGAC 002560
002561 CTAAATACAG AAGTGTCAAG CCTAGAAGGA AGTAAAATTT GGAAGAAAGT ACATGGCATA TGAAAGAAAA ATAACAACCC 002640
002641 AACAACATCT GACATTATGG AATACTTAAA TAAAAATAAA ATTTTAGATT CA
Predicted Small Protein
| Name | LINC00536_smProtein_893:1114 |
| Length | 73 |
| Molecular weight | 8319.0952 |
| Aromaticity | 0.109589041096 |
| Instability index | 46.1890410959 |
| Isoelectric point | 6.38275146484 |
| Runs | 13 |
| Runs residual | 0.0339372514361 |
| Runs probability | 0.0390186566657 |
| Amino acid sequence | MYAQQVQQNGLCADEGSKRRAWPGKGDDQAHFPFLCGRTVANTESTHNVHWNFSHLTPSQ VGIRSLEREDFFI |
| Secondary structure | LHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLEEEELLEELLLLL EEEEEEEEELLLL |
| PRMN | - |
| PiMo | - |
