Difference between revisions of "FAM230E"

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Latest revision as of 07:34, 26 December 2018

FAM230E, a lncRNA gene formed from a large segment of the 3' half of theFAM230C sequence duplicated in chr22.

Annotated Information

Name

FAM230E: family with sequence similarity 230 member E (HGNC:52450)

Alias

LINC01662: long intergenic non-protein coding RNA 1662 (HGNC:52450)

Characteristics

This gene belongs to the family of long 8 intergenic non-coding RNA genes in human chromosomal region 22q11.21. This gene carries the TBTA sequence which consists of satellite DNA, Alu elements, and AT-rich sequences.[1]

Function

Functions of RNA transcripts from this family are not known.[1]

Regulation

Please input information here.

Expression

RNA transcripts of these eight FAM230C-related genes are expressed almost exclusively in the testes. [1]

Disease

Please input information here.

Labs working on this lncRNA

Department of Molecular Genetics and Microbiology, School of Medicine Stony Brook University, Stony Brook, New York, United States of America.

References

  1. 1.0 1.1 1.2 Delihas N. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence[J]. Plos One. 2018, 13(4):e0195702-e0195702.

Sequence

>gi|642643|ref|NR_136561.1| Homo sapiens family with sequence similarity 230 member E (FAM230E), long non-coding RNA

000001 GATTAGGGAT CTCCTGCCCT TGGTCCTAAG TGCCACTATC TGTGCTGAGT TTTTCAAAGG TCAGAGCAGA TTGAACCATT 000080
000081 GTGGTTTCAT TTTCCCTGAT TTTGATTTTT CTTATGGGGA ACCTGTGTGG CTGCATTCAA GGTGACTCGA AGAAGCCTTC 000160
000161 CAAAAAGCGT GTGAAAAGGA AGCCCTACTC TACTACCAAG GTGACTTCAG GGAGCACATT CAATGAGAAT ACAAGAAGAT 000240
000241 ATGCTGTGCA CACCAACCAG TGTAGGAGAC CTCATGGCTC CCGGGTAAAG AAGAAGAGGT ACCCACAAGA AGATGACTTC 000320
000321 CATCATACAG TCTTCAGCAA CCTTGAAAGA TTGGACAAGC TTCAGCCCAC TCTTGAAGCC TCTGAGGAGT CTCTAGTTCA 000400
000401 CAAGGACAGA GGAGATGGAG AGAGGCCAGT CAACGTGAGG GTGGTGCAGG TGGCCCCTCT GAGGCGTGAA TCTAGAGCCA 000480
000481 TTGACACTGG AGAATGATAC CTACCCTGAA ATAACTCACT TCCTGAGAAA AAAGCGCCAT CTCTAGGGTA CAGAAACCTG 000560
000561 ATTCTGGGCT CCTTTTGGGA AGGAGGATTT GGGGTCTGGT GAGAGCAAAT GATTTTGCAA GTATAAAACC ATGTCCAGAG 000640
000641 AGGCTGTAGG GATATCTGTG AGCCCAGAGG AAACACCAGG GGATCCTGTG CGAAGCACCA TGGCTTCAGC TAGGGTGGGA 000720
000721 GGAGTGGGTG GGCCTCTCTC TAATGACTTA TCCTGGTGTT TGTGTTTCTA AAGATTTGAT TGTGGAGAGC ATATCTGATG 000800
000801 ATGGGGATTT GTAGGTAGGT AACTACTTTC CACGTAAGAT CCAATTGGAG AGAGTTCCCA GGGGCCTTCG GGGTATCCAT 000880
000881 GCTGCTTGGG AGGTTAAGGG AGGGGGCATG AAATCAAAAC AAAACAGGAA ATATGTGTCA TATTGGACTT GGTCTTTTCC 000960
000961 GGGTTTATTG GCATAATAGT TAGAACTGTC TCTCTGGGCT ATGAGGGTGC TGTGTTATTT AAAGGTGGTC TTTCCCAGAA 001040
001041 CACCTGGCCT TTTCTTTTCT GCCTCTGCCA AACATCACAG CCTTTGGGTT GGATTAGTCA GCACCCCTTG GGATTGTGCA 001120
001121 GAAGAGGTTT GGGGTTGCAT CGAGTGTCAC CTGTGGTGAA CAGAATCTGA GGGACACAAC TCTCTCACAG GCACTTCCTC 001200
001201 CAACCTGGAG ACAGAATTCT CCTGGTGTGT GCCCAGGGGT GGAGGAGAAA TTGACAGTCT GCCTCTGAAC TTTCAGGACT 001280
001281 TTAAAAAGCA CTCATGTTTC CATCCTCACT GTTGACTCCT GGCTTAAAGG GATCTCCCGG GGTGAGTGAG GAGGCGGGAT 001360
001361 CGGACCCTAG CAGTCTGACG GCAGCACCTG TGTTCCTCTG CACTGGGCCG TGGATGACAT TACACACCTT GCCACTCCCA 001440
001441 CGGTCCTGTG TGTTCCGGAT ATTTTAAAAT AATGGCTATA AGGCTGAGCA CTTCAGGATA TGCTGTTTTG CTGTGTGCAG 001520
001521 ATGGAGGCAG TGGCTGGAGT GAATGAACGG CAACACTTGC TGGCAACCGG CAGAAGCTGA GAGACAGGGA ACAGGCTCTC 001600
001601 CTCCAGAGCC TCCAGGAGCC AGGCCTTTGG ACACCTTGAA TGTGGGCTTC TGGGAGACCA TGCGTTTCTG TTATAAGCAG 001680
001681 CCCAGTCTCT GGCAGTTTTT ACGGCTGCCC CGGAACACTC ATCTATACCT GTCTGACAAG GTCAAGCTCC AAGGAAGGGA 001760
001761 TTCTTTACAT ATCTACATTG TTTGCAGATT TTACAATAAT CATTTATTCT TGCATGGCTG ATCATTGTTA ACCAATACAA 001840
001841 ATAAAATAAT AAAGAAATG