Difference between revisions of "EPIC1"
(Created page with "==Annotated Information== ===Name=== ''EPIC1'': Epigeneticallyinduced lncRNA1 (HGNC nomenclature) LOC284930<ref name="ref1" /> ===Characteristics=== ''EPIC1'' is an intergen...") |
|||
| Line 5: | Line 5: | ||
===Characteristics=== | ===Characteristics=== | ||
| − | ''EPIC1'' is an intergenic 1815 bp long non-coding RNA, located on chromosome chr22:q13.31, consisting nine exons. Downstream of EPIC1 gene transcription start site CpG island is present<ref name=" | + | ''EPIC1'' is an intergenic 1815 bp long non-coding RNA, located on chromosome chr22:q13.31, consisting nine exons. Downstream of EPIC1 gene transcription start site CpG island is present<ref name="ref1" />. |
Revision as of 08:30, 8 November 2018
Contents
Annotated Information
Name
EPIC1: Epigeneticallyinduced lncRNA1 (HGNC nomenclature) LOC284930[1]
Characteristics
EPIC1 is an intergenic 1815 bp long non-coding RNA, located on chromosome chr22:q13.31, consisting nine exons. Downstream of EPIC1 gene transcription start site CpG island is present[1].
Function
Regulation
EPIC1 is directly controlled by DNA methylation at the CpG islands in its promoter region [1].
Diseases
- Breast cancer [1]
Expression
Labs working on this lncRNA
- Center for Pharmacogenetics, Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA 15261, USA [1]
- University of Pittsburgh Cancer Institute, University of Pittsburgh, Pittsburgh, PA 15261, USA.[1]
- Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15261, USA.[1]
References
Sequence
>gi|284930|ref|NR_122046.1| Homo sapiens , EPIC1 long non-coding RNA
000001 ACCTTGGGGA GGGGCCAGCT GCTGTGTTCA GTCCGCCATT GCAAACACGA AGCTCTTCCA GAAACGCCCT CACAGACACC 000080
000081 CCGGAAGTCA CGTACCCACT CTGTAGGTGC CCCGGGGCAC AGGCAAGCGG ACGAGCCAGT TATCCCTCAG AGCTCCTGCT 000160
000161 GCCTCGCCCG CTTTCTCTCG GAAACGTGAA GTGTGGCCTC AGCTGAAAGT GAGGTGGGCC TCATTCAATC AGTTGAATTC 000240
000241 TTCAAGAGAG AAAAACTGAA GTCCCTTAGA AGGAAAGAGT TCTGCCTTCA GACTGTCTTT GAACTTAAGA CTGTAGCGTC 000320
000321 GACTCCTGCC GGAATTTCCA GCCTGCTGGC CAGCTCTGCA GATTCACACT TGCCAGCCTC CACAATCGCA GCTGAGGCGG 000400
000401 AGGAACCCTA AGGGCTCATT GAGATCATGG ATTTGCCCTT CTATGCATTG ATGGAGCACC TGCTGCCCAC AGCGTCTGTA 000480
000481 TTTGGTGCTG GGATGCTGAG GACACTGAGA TCTTCAAACA GAGGCTGCCA CTCTAAGCAA ACAGATCCCG AGCCCTGGAC 000560
000561 TCTGAAGCTT GGGCCCAGTT CTCCTTTTCT CCGGGTTTCA GATCCCACTG TGAAGTGAGG GGGCCCTTCT GATTCAGGAC 000640
000641 CCGGGGAAGC CAGGGGCATG AGCATCGGTG CCTCTTCTCT ATTTCAAGGA CCCTTCTGGG TGTAAAGTTC TCTGAGATGC 000720
000721 CTTACATGGA TTCCCACCAC TGCAAGATAA CCATCGTATG TAAAGTGTTA TGACCAGCAG AGCGTAATTG AAGTGCATTC 000800
000801 CAGAGGGAAA GACAGCGGCT CAGATGAGGC TTCAGGCTTG ACCAAATCTG ACTGGCTGGC TGCCGGAGAC ACTGCTACCC 000880
000881 ATCGGCCCTT AATAAATGGC CTCATTTGAT CATCATGTGA TCTTCAGAAG CTGGGCTTGA TTATCCTTGC CAAACAAAAT 000960
000961 GCTGAAACCA AAAATCTGAA AGTAAATCAA AGGTTTCGCC ATCATGTAAA CCCTTGGGCG ACAGAGTCTA CCTGTCTCCC 001040
001041 CCTGATATTG TTCTATGAGA TTTCGATGCT ATCTTCATTG CCAGCAGCCC TGACAAAGAT GCACTGCAGA CGGATAGCCT 001120
001121 CTCAGGAACC TGCTTACCTC AGAGCCTGCT GCGGACTGAG TTGTCTTCTC CAAAATCCAT TTGTGGAGGC CCTCATCCCC 001200
001201 AGTGGGAGAG TATTTGGAGA TGAAGCATTT GGAGGTGATT AAGCTTAGAT GAGCTCAGAG TGGAGCCTCA GGATGGCATC 001280
001281 GATGCCCTGG TAAAGAGGGA CACTGAGACC TGGCCCTCCC TTGCTCTCCA CCGTGTGAGG ACACAATGAG ATGGTGGCCA 001360
001361 CCTACAAGCC AGGAACTGAA CCCTACGGGG CCTTGACACT GGCCGTTCCA GCCTCCAGAA TGGCTAGGAA TAAATGTCTG 001440
001441 CTCTTTAAGT CACTGGGCGG TGGAGCTTTG TTATGGCAGC ACCAGGGGCT GGTTGAGAGC CTTTGCATGG CTCTTGTTCC 001520
001521 ACCTGGAATG AGATTTCTAA CTCTTGGCTA CCTCACCCCC TTACCTCATT GTTTCATGTT GCAACCACCC ACCCACTCCC 001600
001601 CATGTCTCTG GCATTCTCAT TTATTTTTTC TTTGATTTCA TAGAACACAT CACAAAGCCA TTTGCTCATG CATGATGTTT 001680
001681 ATTGTCTATT TTCTATCTCC CTGCTAGAGG GTAAGATGCT CAAGAACACT GCTCTGTCTG CCTCCCTGGA CCCAGAAAAT 001760
001761 GCTTGGCGTG TGGTAGAACT TAGATATATT TGTGTTGAAT AAATTAATTG AAGGG
000081 CCGGAAGTCA CGTACCCACT CTGTAGGTGC CCCGGGGCAC AGGCAAGCGG ACGAGCCAGT TATCCCTCAG AGCTCCTGCT 000160
000161 GCCTCGCCCG CTTTCTCTCG GAAACGTGAA GTGTGGCCTC AGCTGAAAGT GAGGTGGGCC TCATTCAATC AGTTGAATTC 000240
000241 TTCAAGAGAG AAAAACTGAA GTCCCTTAGA AGGAAAGAGT TCTGCCTTCA GACTGTCTTT GAACTTAAGA CTGTAGCGTC 000320
000321 GACTCCTGCC GGAATTTCCA GCCTGCTGGC CAGCTCTGCA GATTCACACT TGCCAGCCTC CACAATCGCA GCTGAGGCGG 000400
000401 AGGAACCCTA AGGGCTCATT GAGATCATGG ATTTGCCCTT CTATGCATTG ATGGAGCACC TGCTGCCCAC AGCGTCTGTA 000480
000481 TTTGGTGCTG GGATGCTGAG GACACTGAGA TCTTCAAACA GAGGCTGCCA CTCTAAGCAA ACAGATCCCG AGCCCTGGAC 000560
000561 TCTGAAGCTT GGGCCCAGTT CTCCTTTTCT CCGGGTTTCA GATCCCACTG TGAAGTGAGG GGGCCCTTCT GATTCAGGAC 000640
000641 CCGGGGAAGC CAGGGGCATG AGCATCGGTG CCTCTTCTCT ATTTCAAGGA CCCTTCTGGG TGTAAAGTTC TCTGAGATGC 000720
000721 CTTACATGGA TTCCCACCAC TGCAAGATAA CCATCGTATG TAAAGTGTTA TGACCAGCAG AGCGTAATTG AAGTGCATTC 000800
000801 CAGAGGGAAA GACAGCGGCT CAGATGAGGC TTCAGGCTTG ACCAAATCTG ACTGGCTGGC TGCCGGAGAC ACTGCTACCC 000880
000881 ATCGGCCCTT AATAAATGGC CTCATTTGAT CATCATGTGA TCTTCAGAAG CTGGGCTTGA TTATCCTTGC CAAACAAAAT 000960
000961 GCTGAAACCA AAAATCTGAA AGTAAATCAA AGGTTTCGCC ATCATGTAAA CCCTTGGGCG ACAGAGTCTA CCTGTCTCCC 001040
001041 CCTGATATTG TTCTATGAGA TTTCGATGCT ATCTTCATTG CCAGCAGCCC TGACAAAGAT GCACTGCAGA CGGATAGCCT 001120
001121 CTCAGGAACC TGCTTACCTC AGAGCCTGCT GCGGACTGAG TTGTCTTCTC CAAAATCCAT TTGTGGAGGC CCTCATCCCC 001200
001201 AGTGGGAGAG TATTTGGAGA TGAAGCATTT GGAGGTGATT AAGCTTAGAT GAGCTCAGAG TGGAGCCTCA GGATGGCATC 001280
001281 GATGCCCTGG TAAAGAGGGA CACTGAGACC TGGCCCTCCC TTGCTCTCCA CCGTGTGAGG ACACAATGAG ATGGTGGCCA 001360
001361 CCTACAAGCC AGGAACTGAA CCCTACGGGG CCTTGACACT GGCCGTTCCA GCCTCCAGAA TGGCTAGGAA TAAATGTCTG 001440
001441 CTCTTTAAGT CACTGGGCGG TGGAGCTTTG TTATGGCAGC ACCAGGGGCT GGTTGAGAGC CTTTGCATGG CTCTTGTTCC 001520
001521 ACCTGGAATG AGATTTCTAA CTCTTGGCTA CCTCACCCCC TTACCTCATT GTTTCATGTT GCAACCACCC ACCCACTCCC 001600
001601 CATGTCTCTG GCATTCTCAT TTATTTTTTC TTTGATTTCA TAGAACACAT CACAAAGCCA TTTGCTCATG CATGATGTTT 001680
001681 ATTGTCTATT TTCTATCTCC CTGCTAGAGG GTAAGATGCT CAAGAACACT GCTCTGTCTG CCTCCCTGGA CCCAGAAAAT 001760
001761 GCTTGGCGTG TGGTAGAACT TAGATATATT TGTGTTGAAT AAATTAATTG AAGGG
