Difference between revisions of "ENST00000602640.1"

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sequence = <dnaseq>ATTGCAAGGTCCGATCCATTCCCATCAGTGTTGAGGAGAGGAAGAGAGGTCTTGTTGGAGAAGAGTAGCCATCGAGGAGGGGACAGTGGTGCTAGGGCTTCCTTCAGCCTCCCAGCCCCCAGCACAGGAGAGGGAGACAGCAGAGAGGGCCGGAGGGAGGGAGCTGGTGGCTTAAAATGGAGCCGTTTACAACCCCGCACAGCAAATGGAGCCATTGGGAGGACACTTGACCGAGAGGAGAGCATTGCTTGAGCCAGGGGTGCCGTCTGCAGGACAGAGACAGGAGGCAGTGTTGTTTCCAGGGCATCGTGGACCATGGCACAGGTGAGCAATTTAAAAAGGTGATTGGAATCATATGTTAGAATAATGACCTTAGCAGTCAAAGGCTCCTGGAATTTGTCATTTAATTTCATATTTTAGGTGGACTGATCTGTAATTTAGTTAATTTCACATCTCCATCTAGGAAAACTGGAGCTCTGCACAATATTTTCTGCAGACGACAAAGTATTCACCCAAACTATTTCTCATAGTAAAATGTGCTCTTTGTCCCCAGAGAACTGCTGAATACTACATAAGATCTGTGTAGGAGCCATGCTTTAACAACAACAAACACCTCAGACACACAACAACCCTTTCCTCCCTCGATAAAGATACTGAAAAGAATCTGGTCTCTGGGGTGAGGAGTAGGGGAAGCAGGTGCAAGCAAGTGGGTGCAGAGGAGTGGGAAGATGGCATTTTGTGTAGGAAAGAATTTAACGTTGCCCAAAGAGAGGTCTGGCTTTTGTCCTCACCTTCTGGGAGGTGAACTCTAAGCCCTTGGAATATCATGCCTGATTGGAGTTTGTTTGCCTGGGATCCTTGTGTCACAGAATGGTCTAACCATATGATTTAGGGTAGATGCTGGCCACACTGGATAGGTTTAGGGTAGGGGTTGGCTGTGCCAGAAAGACCAACAATGTGACTTAGGGTGGGGTCTTTGGGTCACGTGGTATCAGCTGACTCTGGAGGAGCTGGAGAGGGAGGGCAGTCACCTGTGTGATGGAGCCGCAATAAAAACTCTGAACACTGGGGCTATGGTGAGCTGCCCTGGTTGGCAGTACTCCATGGGTACTGTCACACATCAATGCCAGGAAAGTCATGCTTTTCATGATTCCATGGGGAAGAGGACAGTGGAAGCTCCATGTCTGGTACCTTCCTGGACTATGCCCTATGCCCTTCCTCCCTTGGCTGATTTTAATCTGTATCCTTTTGATGTAATAATGTGCAACTGTGAGTATGAGAGCTTTTGATGAGTTCTGCGTCCTTCCAGTGAATGATCAAACCTGAGGGTGGTCTAGGGTACCCCTTGCAGTTGGTGCAGCAATAAAGGTGGTCTTATGTGGATGGTGCTCCCTTTAACTTGACAGGTGGCTAACTGATATGGTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTTCCATGTGTTGTGGGAGGGACCCAGTCGAAGATAATTGAATCATGGAGGCAAGTCTTTCCTGTGTTGTTCTCACGATAGTGAATACATCTCACGAGATCTGATGGTTTTAAAAACAGGAGTTGCCCTGTAAGAGCTCTTTCTCCCTTTGCCTGCTACCATCCATGTAAGATGTGACTTGCTCCTCCTTGCCTTCCACCATGATTGTGAAACTTCCCCAGCCACGTGGAACTGTAAGTCCAATTAAACCCCTTTCTTTTGTAAA</dnaseq>|
 
sequence = <dnaseq>ATTGCAAGGTCCGATCCATTCCCATCAGTGTTGAGGAGAGGAAGAGAGGTCTTGTTGGAGAAGAGTAGCCATCGAGGAGGGGACAGTGGTGCTAGGGCTTCCTTCAGCCTCCCAGCCCCCAGCACAGGAGAGGGAGACAGCAGAGAGGGCCGGAGGGAGGGAGCTGGTGGCTTAAAATGGAGCCGTTTACAACCCCGCACAGCAAATGGAGCCATTGGGAGGACACTTGACCGAGAGGAGAGCATTGCTTGAGCCAGGGGTGCCGTCTGCAGGACAGAGACAGGAGGCAGTGTTGTTTCCAGGGCATCGTGGACCATGGCACAGGTGAGCAATTTAAAAAGGTGATTGGAATCATATGTTAGAATAATGACCTTAGCAGTCAAAGGCTCCTGGAATTTGTCATTTAATTTCATATTTTAGGTGGACTGATCTGTAATTTAGTTAATTTCACATCTCCATCTAGGAAAACTGGAGCTCTGCACAATATTTTCTGCAGACGACAAAGTATTCACCCAAACTATTTCTCATAGTAAAATGTGCTCTTTGTCCCCAGAGAACTGCTGAATACTACATAAGATCTGTGTAGGAGCCATGCTTTAACAACAACAAACACCTCAGACACACAACAACCCTTTCCTCCCTCGATAAAGATACTGAAAAGAATCTGGTCTCTGGGGTGAGGAGTAGGGGAAGCAGGTGCAAGCAAGTGGGTGCAGAGGAGTGGGAAGATGGCATTTTGTGTAGGAAAGAATTTAACGTTGCCCAAAGAGAGGTCTGGCTTTTGTCCTCACCTTCTGGGAGGTGAACTCTAAGCCCTTGGAATATCATGCCTGATTGGAGTTTGTTTGCCTGGGATCCTTGTGTCACAGAATGGTCTAACCATATGATTTAGGGTAGATGCTGGCCACACTGGATAGGTTTAGGGTAGGGGTTGGCTGTGCCAGAAAGACCAACAATGTGACTTAGGGTGGGGTCTTTGGGTCACGTGGTATCAGCTGACTCTGGAGGAGCTGGAGAGGGAGGGCAGTCACCTGTGTGATGGAGCCGCAATAAAAACTCTGAACACTGGGGCTATGGTGAGCTGCCCTGGTTGGCAGTACTCCATGGGTACTGTCACACATCAATGCCAGGAAAGTCATGCTTTTCATGATTCCATGGGGAAGAGGACAGTGGAAGCTCCATGTCTGGTACCTTCCTGGACTATGCCCTATGCCCTTCCTCCCTTGGCTGATTTTAATCTGTATCCTTTTGATGTAATAATGTGCAACTGTGAGTATGAGAGCTTTTGATGAGTTCTGCGTCCTTCCAGTGAATGATCAAACCTGAGGGTGGTCTAGGGTACCCCTTGCAGTTGGTGCAGCAATAAAGGTGGTCTTATGTGGATGGTGCTCCCTTTAACTTGACAGGTGGCTAACTGATATGGTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTTCCATGTGTTGTGGGAGGGACCCAGTCGAAGATAATTGAATCATGGAGGCAAGTCTTTCCTGTGTTGTTCTCACGATAGTGAATACATCTCACGAGATCTGATGGTTTTAAAAACAGGAGTTGCCCTGTAAGAGCTCTTTCTCCCTTTGCCTGCTACCATCCATGTAAGATGTGACTTGCTCCTCCTTGCCTTCCACCATGATTGTGAAACTTCCCCAGCCACGTGGAACTGTAAGTCCAATTAAACCCCTTTCTTTTGTAAA</dnaseq>|
 
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[[Category:Intronic(AS)]]
+
[[Category:Intronic(AS)]][[Category:ENSG00000270171.1]]

Revision as of 05:41, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000602640.1

Source

Gencode19

Same with

,

Classification

intronic(AS)

Length

1721 nt

Genomic location

chr1-:7753184..7754904

Exon number

1

Exons

7753184..7754904

Genome context

Sequence
000001 ATTGCAAGGT CCGATCCATT CCCATCAGTG TTGAGGAGAG GAAGAGAGGT CTTGTTGGAG AAGAGTAGCC ATCGAGGAGG 000080
000081 GGACAGTGGT GCTAGGGCTT CCTTCAGCCT CCCAGCCCCC AGCACAGGAG AGGGAGACAG CAGAGAGGGC CGGAGGGAGG 000160
000161 GAGCTGGTGG CTTAAAATGG AGCCGTTTAC AACCCCGCAC AGCAAATGGA GCCATTGGGA GGACACTTGA CCGAGAGGAG 000240
000241 AGCATTGCTT GAGCCAGGGG TGCCGTCTGC AGGACAGAGA CAGGAGGCAG TGTTGTTTCC AGGGCATCGT GGACCATGGC 000320
000321 ACAGGTGAGC AATTTAAAAA GGTGATTGGA ATCATATGTT AGAATAATGA CCTTAGCAGT CAAAGGCTCC TGGAATTTGT 000400
000401 CATTTAATTT CATATTTTAG GTGGACTGAT CTGTAATTTA GTTAATTTCA CATCTCCATC TAGGAAAACT GGAGCTCTGC 000480
000481 ACAATATTTT CTGCAGACGA CAAAGTATTC ACCCAAACTA TTTCTCATAG TAAAATGTGC TCTTTGTCCC CAGAGAACTG 000560
000561 CTGAATACTA CATAAGATCT GTGTAGGAGC CATGCTTTAA CAACAACAAA CACCTCAGAC ACACAACAAC CCTTTCCTCC 000640
000641 CTCGATAAAG ATACTGAAAA GAATCTGGTC TCTGGGGTGA GGAGTAGGGG AAGCAGGTGC AAGCAAGTGG GTGCAGAGGA 000720
000721 GTGGGAAGAT GGCATTTTGT GTAGGAAAGA ATTTAACGTT GCCCAAAGAG AGGTCTGGCT TTTGTCCTCA CCTTCTGGGA 000800
000801 GGTGAACTCT AAGCCCTTGG AATATCATGC CTGATTGGAG TTTGTTTGCC TGGGATCCTT GTGTCACAGA ATGGTCTAAC 000880
000881 CATATGATTT AGGGTAGATG CTGGCCACAC TGGATAGGTT TAGGGTAGGG GTTGGCTGTG CCAGAAAGAC CAACAATGTG 000960
000961 ACTTAGGGTG GGGTCTTTGG GTCACGTGGT ATCAGCTGAC TCTGGAGGAG CTGGAGAGGG AGGGCAGTCA CCTGTGTGAT 001040
001041 GGAGCCGCAA TAAAAACTCT GAACACTGGG GCTATGGTGA GCTGCCCTGG TTGGCAGTAC TCCATGGGTA CTGTCACACA 001120
001121 TCAATGCCAG GAAAGTCATG CTTTTCATGA TTCCATGGGG AAGAGGACAG TGGAAGCTCC ATGTCTGGTA CCTTCCTGGA 001200
001201 CTATGCCCTA TGCCCTTCCT CCCTTGGCTG ATTTTAATCT GTATCCTTTT GATGTAATAA TGTGCAACTG TGAGTATGAG 001280
001281 AGCTTTTGAT GAGTTCTGCG TCCTTCCAGT GAATGATCAA ACCTGAGGGT GGTCTAGGGT ACCCCTTGCA GTTGGTGCAG 001360
001361 CAATAAAGGT GGTCTTATGT GGATGGTGCT CCCTTTAACT TGACAGGTGG CTAACTGATA TGGTTGGCTG TGTCCCCACC 001440
001441 CAAATCTCAT CTTGAATTTC CATGTGTTGT GGGAGGGACC CAGTCGAAGA TAATTGAATC ATGGAGGCAA GTCTTTCCTG 001520
001521 TGTTGTTCTC ACGATAGTGA ATACATCTCA CGAGATCTGA TGGTTTTAAA AACAGGAGTT GCCCTGTAAG AGCTCTTTCT 001600
001601 CCCTTTGCCT GCTACCATCC ATGTAAGATG TGACTTGCTC CTCCTTGCCT TCCACCATGA TTGTGAAACT TCCCCAGCCA 001680
001681 CGTGGAACTG TAAGTCCAAT TAAACCCCTT TCTTTTGTAA A
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Predicted Small Protein

Name ENST00000602640.1_smProtein_1073:1288
Length 72
Molecular weight 8097.1988
Aromaticity 0.140845070423
Instability index 52.6549295775
Isoelectric point 4.67266845703
Runs 13
Runs residual 0.0345441067457
Runs probability 0.024486024486
Amino acid sequence MVSCPGWQYSMGTVTHQCQESHAFHDSMGKRTVEAPCLVPSWTMPYALPPLADFNLYPFD
VIMCNCEYESF
Secondary structure LLLLLLLEEELLEEEELLLLLLHHHLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLL
EEEELLEEELL
PRMN -
PiMo -