Difference between revisions of "ENST00000547963.1"
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==Annotated Information== | ==Annotated Information== | ||
| + | ===Alias=== | ||
| + | NA | ||
===Transcriptomic Nomeclature=== | ===Transcriptomic Nomeclature=== | ||
Please input transcriptomic nomeclature information here. | Please input transcriptomic nomeclature information here. | ||
===Function=== | ===Function=== | ||
| − | + | Function Mechanism: NA [http://www.ncbi.nlm.nih.gov/pubmed/24522499 (PMID:24522499)] | |
| + | |||
| + | Biological Process: pathogenic process | ||
| + | |||
| + | Description: biomarker | ||
| + | ===Disease=== | ||
| + | Disease: esophageal squamous cell cancer [http://www.ncbi.nlm.nih.gov/pubmed/24522499 (PMID:24522499)] | ||
| + | |||
| + | Dysfunction type: NA | ||
| + | |||
| + | Description: we identified a three-lncRNA signature (including the lncRNAs ENST00000435885.1, XLOCNA013014 and ENST00000547963.1) which classified the patients into two groups with significantly different overall survival . The signature was applied to the test group (median survival 21.5 months vs >60 months, p=0.0030) and independent cohort (median survival 25.8 months vs >48 months, p=0.0187) and showed similar prognostic values in both. | ||
| + | |||
===Regulation=== | ===Regulation=== | ||
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sequence = <dnaseq>ACATTTTCCTGGAGCGGCTGGGAAAGAGGAGTCTCTCGAAATTCAGCAACTGCTAACAGCGAGGAGGGGGTGCTAGCCAGGATCACTCCCTCCGAAGTCACACCAGAGGGAGGGCTGGAGGGAGAATCAAATGAAAGAGAGAGGGAGAGAAAGGAAGGAAGAGAAGGAGGGAGAATGGAAGGATGTATGGATTTGGATGTATGGGTTCCATTCCTTCTACCCTGGCAAAAGCTTACTCATCCTTCAGTGTCCATCCAAAATGGCATCTCTTCTTGGGCACCATCTCCAGAGTCTCCTGCAAGCAGGTAGCTACATCCCACAAAACAACCACCCATCTGACCATGCAAGTGTGTGGGGGAATGAAGACCAGCCCAGGAATCTGAGATGAATGTTTTGCTTCTTGCTCTGCCACTGACTCACAGGGTACCCCAAGCAAGTCCCTTCACCTCCTCGGTCTCAGTTTCTCCATTTATACTACTAAGGCAGTGGACATGATGGCCTCAAGTCTCAACATTTTTATTCCCTGAAAAGAAACTCTTGGTGCTGAGTGGTCTTCTTCTGCCCTGACATCTCACCTTTCAAACGCTTGTCTCTTCTCACCCCACCCACCACTTAGCATGTGCTCTTGGAGAACACCCAGGACTCAGGGTCTCTGCACACATCATGAGTCCAGCTCAGCATTTGAGGTGGAATCAGAGGAAAGGAAGGAGAGTGGGGAGAATAGTCAGTATTTTGGCAAGCTCATCATACCTTCCCCCTTTGTATAGAAACTTCAAACCATTTCCCTTTGAAGGCACTACCTCCTTCCCCCAGTTATAAATGAGTGAAGGTCTCAAGCCTGGACAACCAAATGCACAGTGATTGGTTCAACTCTGGACCTGTGACTCAAGCCAGACCAAGGGAGTGACATGCAGGGCTTTGCCTGGAACTATTCTGAAAGGGGCACTCTCTTTCTGCTGGGCTACTGATAATATGTGCATCCGTGATAGAAGAGCCTGCCTGATAATAAAGCCAATAAGGGAAGAGCAGAGCCAAGAGATGGTGGGAGAGCAGATGCCTGAAAATATCATTTGAGCCCCTGGGTCCAGCTGCACCTGAAGCCACCACGATCTCCTGGACTTTGCAGTTACTTGAGTTCATAAATACCCTTTGGCATTAAGCCAGATTGAGTCTTAATGCATATAGAAATAAGAGAAATGAGAAAAGAAATTGAAAAGAGAGACAGCAGAGAACTGATTCTCTACTAGAGCCTCCAGAAGGAATCAACTCTGCCAACACCTTGATTTTGGACTTGTGGCCTTCAGAACAGTGAAATGATAAACATCTGTTATTTTAAGGTACCTAGTGTGTAACATTCCGTCATGACAGCCCTAGGAAATGAATACAGCGAGGAAAATCCTACCAGCACAAAGGCATGGAGGTGCCAGGATGTCTCCTCTGCGTGAAGAGTAGATGTAGATGAGGCTGGAATTATCTATCCTAGCTGCCCAGACCCATGTGCCTTTGTTTTATGTAGTTACAGCACCTATGATACATATTTGTTACCATGTATGTCACTATGAACCTCCTCTGGAGGACGGAGAAGTCAAATACCTTAATTATTCCAACACAAGCTTGCGTGAACAGATAATCATCACTACGAGTATATTGTGTGCCTGCTAAGCACCACACCTGAGATAAGCATTTGCTGTGGTTTGAATGTCCCCTCCAAAGCTCATGCTAAAATTTAATTGCCATTGCAACAGTGTTGCAAGGTGAGAACTTTAAGAGATGATCAGGTCATGAGAACTCTGCCCTCGTGAATGGATTAATACCCTTATCGCAGTAGTGGACCCCCCTTTTCTCTTGCTGTCTGTCTCTCATGTTAGCTTGTGCTTCCTCCTTTCACCATGGGATAACACAGCAAGAAGCCCCTCACCAGATGCTGGCACCTTGCTATTGGACTTCCGGCCTCCAGAACTGAGAAATACATGTCTTTTCCTTATAAATTACCCAGTCTGTGGTATTCTGTTATAGCGGCAGAAAATGGACTAAGACGGCATTTTGCATACATTATCTGTCTTATTAAAAATAATGTTTTTGCCCAGG</dnaseq>| | sequence = <dnaseq>ACATTTTCCTGGAGCGGCTGGGAAAGAGGAGTCTCTCGAAATTCAGCAACTGCTAACAGCGAGGAGGGGGTGCTAGCCAGGATCACTCCCTCCGAAGTCACACCAGAGGGAGGGCTGGAGGGAGAATCAAATGAAAGAGAGAGGGAGAGAAAGGAAGGAAGAGAAGGAGGGAGAATGGAAGGATGTATGGATTTGGATGTATGGGTTCCATTCCTTCTACCCTGGCAAAAGCTTACTCATCCTTCAGTGTCCATCCAAAATGGCATCTCTTCTTGGGCACCATCTCCAGAGTCTCCTGCAAGCAGGTAGCTACATCCCACAAAACAACCACCCATCTGACCATGCAAGTGTGTGGGGGAATGAAGACCAGCCCAGGAATCTGAGATGAATGTTTTGCTTCTTGCTCTGCCACTGACTCACAGGGTACCCCAAGCAAGTCCCTTCACCTCCTCGGTCTCAGTTTCTCCATTTATACTACTAAGGCAGTGGACATGATGGCCTCAAGTCTCAACATTTTTATTCCCTGAAAAGAAACTCTTGGTGCTGAGTGGTCTTCTTCTGCCCTGACATCTCACCTTTCAAACGCTTGTCTCTTCTCACCCCACCCACCACTTAGCATGTGCTCTTGGAGAACACCCAGGACTCAGGGTCTCTGCACACATCATGAGTCCAGCTCAGCATTTGAGGTGGAATCAGAGGAAAGGAAGGAGAGTGGGGAGAATAGTCAGTATTTTGGCAAGCTCATCATACCTTCCCCCTTTGTATAGAAACTTCAAACCATTTCCCTTTGAAGGCACTACCTCCTTCCCCCAGTTATAAATGAGTGAAGGTCTCAAGCCTGGACAACCAAATGCACAGTGATTGGTTCAACTCTGGACCTGTGACTCAAGCCAGACCAAGGGAGTGACATGCAGGGCTTTGCCTGGAACTATTCTGAAAGGGGCACTCTCTTTCTGCTGGGCTACTGATAATATGTGCATCCGTGATAGAAGAGCCTGCCTGATAATAAAGCCAATAAGGGAAGAGCAGAGCCAAGAGATGGTGGGAGAGCAGATGCCTGAAAATATCATTTGAGCCCCTGGGTCCAGCTGCACCTGAAGCCACCACGATCTCCTGGACTTTGCAGTTACTTGAGTTCATAAATACCCTTTGGCATTAAGCCAGATTGAGTCTTAATGCATATAGAAATAAGAGAAATGAGAAAAGAAATTGAAAAGAGAGACAGCAGAGAACTGATTCTCTACTAGAGCCTCCAGAAGGAATCAACTCTGCCAACACCTTGATTTTGGACTTGTGGCCTTCAGAACAGTGAAATGATAAACATCTGTTATTTTAAGGTACCTAGTGTGTAACATTCCGTCATGACAGCCCTAGGAAATGAATACAGCGAGGAAAATCCTACCAGCACAAAGGCATGGAGGTGCCAGGATGTCTCCTCTGCGTGAAGAGTAGATGTAGATGAGGCTGGAATTATCTATCCTAGCTGCCCAGACCCATGTGCCTTTGTTTTATGTAGTTACAGCACCTATGATACATATTTGTTACCATGTATGTCACTATGAACCTCCTCTGGAGGACGGAGAAGTCAAATACCTTAATTATTCCAACACAAGCTTGCGTGAACAGATAATCATCACTACGAGTATATTGTGTGCCTGCTAAGCACCACACCTGAGATAAGCATTTGCTGTGGTTTGAATGTCCCCTCCAAAGCTCATGCTAAAATTTAATTGCCATTGCAACAGTGTTGCAAGGTGAGAACTTTAAGAGATGATCAGGTCATGAGAACTCTGCCCTCGTGAATGGATTAATACCCTTATCGCAGTAGTGGACCCCCCTTTTCTCTTGCTGTCTGTCTCTCATGTTAGCTTGTGCTTCCTCCTTTCACCATGGGATAACACAGCAAGAAGCCCCTCACCAGATGCTGGCACCTTGCTATTGGACTTCCGGCCTCCAGAACTGAGAAATACATGTCTTTTCCTTATAAATTACCCAGTCTGTGGTATTCTGTTATAGCGGCAGAAAATGGACTAAGACGGCATTTTGCATACATTATCTGTCTTATTAAAAATAATGTTTTTGCCCAGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000249550.2]][[Category:lnc-RBM19-1]] | + | [[Category:Intergenic]][[Category:ENSG00000249550.2]][[Category:lnc-RBM19-1]][[Category:Transcripts]] |
Latest revision as of 08:48, 6 November 2018
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Contents
Annotated Information
Alias
NA
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Function Mechanism: NA (PMID:24522499)
Biological Process: pathogenic process
Description: biomarker
Disease
Disease: esophageal squamous cell cancer (PMID:24522499)
Dysfunction type: NA
Description: we identified a three-lncRNA signature (including the lncRNAs ENST00000435885.1, XLOCNA013014 and ENST00000547963.1) which classified the patients into two groups with significantly different overall survival . The signature was applied to the test group (median survival 21.5 months vs >60 months, p=0.0030) and independent cohort (median survival 25.8 months vs >48 months, p=0.0187) and showed similar prognostic values in both.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000547963.1 |
| Source |
Gencode19 |
| Same with |
lnc-RBM19-1:2 |
| Classification |
intergenic |
| Length |
2088 nt |
| Genomic location |
chr12-:114182382..114211488 |
| Exon number |
2 |
| Exons |
114182382..114184400,114211420..114211488 |
| Genome context |
|
| Sequence |
000001 ACATTTTCCT GGAGCGGCTG GGAAAGAGGA GTCTCTCGAA ATTCAGCAAC TGCTAACAGC GAGGAGGGGG TGCTAGCCAG 000080
000081 GATCACTCCC TCCGAAGTCA CACCAGAGGG AGGGCTGGAG GGAGAATCAA ATGAAAGAGA GAGGGAGAGA AAGGAAGGAA 000160 000161 GAGAAGGAGG GAGAATGGAA GGATGTATGG ATTTGGATGT ATGGGTTCCA TTCCTTCTAC CCTGGCAAAA GCTTACTCAT 000240 000241 CCTTCAGTGT CCATCCAAAA TGGCATCTCT TCTTGGGCAC CATCTCCAGA GTCTCCTGCA AGCAGGTAGC TACATCCCAC 000320 000321 AAAACAACCA CCCATCTGAC CATGCAAGTG TGTGGGGGAA TGAAGACCAG CCCAGGAATC TGAGATGAAT GTTTTGCTTC 000400 000401 TTGCTCTGCC ACTGACTCAC AGGGTACCCC AAGCAAGTCC CTTCACCTCC TCGGTCTCAG TTTCTCCATT TATACTACTA 000480 000481 AGGCAGTGGA CATGATGGCC TCAAGTCTCA ACATTTTTAT TCCCTGAAAA GAAACTCTTG GTGCTGAGTG GTCTTCTTCT 000560 000561 GCCCTGACAT CTCACCTTTC AAACGCTTGT CTCTTCTCAC CCCACCCACC ACTTAGCATG TGCTCTTGGA GAACACCCAG 000640 000641 GACTCAGGGT CTCTGCACAC ATCATGAGTC CAGCTCAGCA TTTGAGGTGG AATCAGAGGA AAGGAAGGAG AGTGGGGAGA 000720 000721 ATAGTCAGTA TTTTGGCAAG CTCATCATAC CTTCCCCCTT TGTATAGAAA CTTCAAACCA TTTCCCTTTG AAGGCACTAC 000800 000801 CTCCTTCCCC CAGTTATAAA TGAGTGAAGG TCTCAAGCCT GGACAACCAA ATGCACAGTG ATTGGTTCAA CTCTGGACCT 000880 000881 GTGACTCAAG CCAGACCAAG GGAGTGACAT GCAGGGCTTT GCCTGGAACT ATTCTGAAAG GGGCACTCTC TTTCTGCTGG 000960 000961 GCTACTGATA ATATGTGCAT CCGTGATAGA AGAGCCTGCC TGATAATAAA GCCAATAAGG GAAGAGCAGA GCCAAGAGAT 001040 001041 GGTGGGAGAG CAGATGCCTG AAAATATCAT TTGAGCCCCT GGGTCCAGCT GCACCTGAAG CCACCACGAT CTCCTGGACT 001120 001121 TTGCAGTTAC TTGAGTTCAT AAATACCCTT TGGCATTAAG CCAGATTGAG TCTTAATGCA TATAGAAATA AGAGAAATGA 001200 001201 GAAAAGAAAT TGAAAAGAGA GACAGCAGAG AACTGATTCT CTACTAGAGC CTCCAGAAGG AATCAACTCT GCCAACACCT 001280 001281 TGATTTTGGA CTTGTGGCCT TCAGAACAGT GAAATGATAA ACATCTGTTA TTTTAAGGTA CCTAGTGTGT AACATTCCGT 001360 001361 CATGACAGCC CTAGGAAATG AATACAGCGA GGAAAATCCT ACCAGCACAA AGGCATGGAG GTGCCAGGAT GTCTCCTCTG 001440 001441 CGTGAAGAGT AGATGTAGAT GAGGCTGGAA TTATCTATCC TAGCTGCCCA GACCCATGTG CCTTTGTTTT ATGTAGTTAC 001520 001521 AGCACCTATG ATACATATTT GTTACCATGT ATGTCACTAT GAACCTCCTC TGGAGGACGG AGAAGTCAAA TACCTTAATT 001600 001601 ATTCCAACAC AAGCTTGCGT GAACAGATAA TCATCACTAC GAGTATATTG TGTGCCTGCT AAGCACCACA CCTGAGATAA 001680 001681 GCATTTGCTG TGGTTTGAAT GTCCCCTCCA AAGCTCATGC TAAAATTTAA TTGCCATTGC AACAGTGTTG CAAGGTGAGA 001760 001761 ACTTTAAGAG ATGATCAGGT CATGAGAACT CTGCCCTCGT GAATGGATTA ATACCCTTAT CGCAGTAGTG GACCCCCCTT 001840 001841 TTCTCTTGCT GTCTGTCTCT CATGTTAGCT TGTGCTTCCT CCTTTCACCA TGGGATAACA CAGCAAGAAG CCCCTCACCA 001920 001921 GATGCTGGCA CCTTGCTATT GGACTTCCGG CCTCCAGAAC TGAGAAATAC ATGTCTTTTC CTTATAAATT ACCCAGTCTG 002000 002001 TGGTATTCTG TTATAGCGGC AGAAAATGGA CTAAGACGGC ATTTTGCATA CATTATCTGT CTTATTAAAA ATAATGTTTT 002080 002081 TGCCCAGG |
