Difference between revisions of "ENST00000518837.1"
| Line 42: | Line 42: | ||
sequence = <dnaseq>GTTTCCAAGGAAGACTAAGAAAACTGCAAAATTAAAGTGCACTGCAACATGAAATGCTGCTGGTGGCCAGGCGAGATCGTGGTGTCAAAAAGGCAAGATGGAATCTCACGCTATCACCCAGGATGGAGCGCAGGGGTGTGATCATAGCTTACTGCAGCCTCCACATCCTGGGCTCAAGAGATTCTTCCATCTCAACCTCCCAGATTACTGGGATTATAGGTATGAACCACTGCATCTGGCCTGGAGAGACATTTTTTAAAGAGAAAAATCAATTGCTGAGGGCTTTGGATATACTACATATGCTATTATCTGTAAATGGATGATTTTCTGTGTTATACATATTATTTTAGAATCAAAATAAGTCTGGCCAATAACTGCACTCAATTCTCTTGCCTCATAAATGTAACATGTCCAAAACTGAACTTTTGTTTTCTGCCACAAAAACCTGTTCCTTCTTCAGCACATGACATTGCTATTCACCCAGACATC</dnaseq>| | sequence = <dnaseq>GTTTCCAAGGAAGACTAAGAAAACTGCAAAATTAAAGTGCACTGCAACATGAAATGCTGCTGGTGGCCAGGCGAGATCGTGGTGTCAAAAAGGCAAGATGGAATCTCACGCTATCACCCAGGATGGAGCGCAGGGGTGTGATCATAGCTTACTGCAGCCTCCACATCCTGGGCTCAAGAGATTCTTCCATCTCAACCTCCCAGATTACTGGGATTATAGGTATGAACCACTGCATCTGGCCTGGAGAGACATTTTTTAAAGAGAAAAATCAATTGCTGAGGGCTTTGGATATACTACATATGCTATTATCTGTAAATGGATGATTTTCTGTGTTATACATATTATTTTAGAATCAAAATAAGTCTGGCCAATAACTGCACTCAATTCTCTTGCCTCATAAATGTAACATGTCCAAAACTGAACTTTTGTTTTCTGCCACAAAAACCTGTTCCTTCTTCAGCACATGACATTGCTATTCACCCAGACATC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:lnc-PANK3-4]] | + | [[Category:Intronic(AS)]][[Category:lnc-PANK3-4]][[Category:NONHSAG042166]] |
Revision as of 15:04, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000518837.1 |
| Source |
Gencode19 |
| Same with |
lnc-PANK3-4:1,NONHSAT104978 |
| Classification |
intronic(AS) |
| Length |
489 nt |
| Genomic location |
chr5-:167392192..167394091 |
| Exon number |
2 |
| Exons |
167392192..167392583,167393995..167394091 |
| Genome context |
|
| Sequence |
000001 GTTTCCAAGG AAGACTAAGA AAACTGCAAA ATTAAAGTGC ACTGCAACAT GAAATGCTGC TGGTGGCCAG GCGAGATCGT 000080
000081 GGTGTCAAAA AGGCAAGATG GAATCTCACG CTATCACCCA GGATGGAGCG CAGGGGTGTG ATCATAGCTT ACTGCAGCCT 000160 000161 CCACATCCTG GGCTCAAGAG ATTCTTCCAT CTCAACCTCC CAGATTACTG GGATTATAGG TATGAACCAC TGCATCTGGC 000240 000241 CTGGAGAGAC ATTTTTTAAA GAGAAAAATC AATTGCTGAG GGCTTTGGAT ATACTACATA TGCTATTATC TGTAAATGGA 000320 000321 TGATTTTCTG TGTTATACAT ATTATTTTAG AATCAAAATA AGTCTGGCCA ATAACTGCAC TCAATTCTCT TGCCTCATAA 000400 000401 ATGTAACATG TCCAAAACTG AACTTTTGTT TTCTGCCACA AAAACCTGTT CCTTCTTCAG CACATGACAT TGCTATTCAC 000480 000481 CCAGACATC |
Predicted Small Protein
| Name | ENST00000518837.1_smProtein_53:322 |
| Length | 90 |
| Molecular weight | 10105.8458 |
| Aromaticity | 0.0561797752809 |
| Instability index | 46.0853932584 |
| Isoelectric point | 10.4955444336 |
| Runs | 15 |
| Runs residual | 0.0253359770875 |
| Runs probability | 0.0326620738386 |
| Amino acid sequence | MLLVARRDRGVKKARWNLTLSPRMERRGVIIAYCSLHILGSRDSSISTSQITGIIGMNHC IWPGETFFKEKNQLLRALDILHMLLSVNG |
| Secondary structure | LEEEEEELLLLHHHHEELLLLLLEELLLEEEEEEEEEEELLLLLLLLHHHHEEEELLLLL LLLLLLHHHHHHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
