ENST00000426539.1
GACAT3, gastric cancer associated transcript 3, plays crucial role during cancer progression and may be a potential tumor marker for gastric cancer.
Contents
Annotated Information
Transcriptomic Nomeclature
GACAT3, gastric cancer associated transcript 3 (HGNC nomenclature)
lncRNA-AC130710[1]
Function
As one of lncRNAs, GACAT3 was up-expressed in gastric cancer. Its levels were associated with tumor size, TNM stages, distal metastasis, and tissue CEA expression, which suggested that lncRNA-AC130710 plays crucial role during cancer progression and may be a potential tumor marker for gastric cancer[1].
Regulation
miR-129-5p may play an important role in the down-regulating of GACAT3 expression in gastric cancer cells[1].
Expression
AC130710 was upregulated in the gastric cancer tissues and gastric cancer lines[1].
Primer | Sense | Antisense |
---|---|---|
GAPDH | 5'-GGGGGCTTGTTTCTTTGTGTAG-3' | 5'-CATTCGGCTCTGACCTCTCAC-3'[1] |
GACAT3 | 5'-ACCCACTCCTCCACCTTTGAC-3' | 5'-TGTTGCTGTAGCCAAAATTCGTT-3'[1] |
Diseases
Gastric cancer[1]
Labs working on this lncRNA
Department of Biochemistry and Molecular Biology, Zhejiang Provincial Key Laboratory of Pathophysiology, Ningbo University School of Medicine, Ningbo, 315211, China[1].
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Xu C, Shao Y, Xia T, Yang Y, Dai J, Luo L, et al. lncRNA-AC130710 targeting by miR-129-5p is upregulated in gastric cancer and associates with poor prognosis[J]. Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine. 2014,35(10):9701-6.
Basic Information
Transcript ID |
ENST00000426539.1 |
Source |
Gencode19 |
Same with |
lnc-MYCN-2:1,NONHSAT069315,GACAT3,lncRNA-AC130710 |
Classification |
intergenic |
Length |
1096 nt |
Genomic location |
chr2+:16190549..16225923 |
Exon number |
4 |
Exons |
16190549..16190799,16213426..16213564,16221020..16221212,16225411..16225923 |
Genome context |
|
Sequence |
000001 CTGACCACAG GCTTTGGTTT CAGGACAATG CAGACTGGGC AGCAGATCAA ATAAAGCCAT CACCAGCGCA TAGGACAGTC 000080
000081 TCAAGGGGGT TAACTGTCCC TGTCCTCTAC AATTGTTGCT GGGGAGCAAT TTGCCCTTGA ATCTTCCATA CTGTCCCTAA 000160 000161 ATTGACAATT TCATTTCCTT CCAATCCCGC CCCCTGCCCT GAAGATCTGC TGAGGCTGCG AGTTCCATGT GAGAAGGCAG 000240 000241 GAGGATAATA GCCAGCTCCT GTGTAAGGAA GTCAAGATTT TCTCAAGGGA AAAATCACCC TAGAAACCAT CAACTCATGA 000320 000321 CAAACGTGAT CTCCAACGTT CATTGTGGAA AATAGCCTCA AGGATGAGAT GATGAGGATT TTGAAGATGG GTCTTAAGAG 000400 000401 AAAACACTGA GGTCCCTCGA AGATGAAGAA ATCCTCATGA AGATGAATCC AAAGGTGGAT TCAATTTCAG CTGTCTTTGG 000480 000481 ACTGAAGACT GCAACATCAA CACTTCCCAG GGTCTCCAGC CTGCCCGCCT CTCCCGCAAA TTTCAGATTT GCAAGTATCC 000560 000561 ACAGTCATGA GCAATTCCTT AAATGAAGTG CAAAAAATGA ACAAGGAGGC CCAATGATGC ATCTGCTTAA CTTTTCAGTT 000640 000641 GTCAATGCAA ATTAAGCACA AAGAGGACAG AGTTGATGAC ATATCAGGAA CATTTTTTAC TTCCGGAGCA GGTCTGAGTC 000720 000721 CCAGCGGAAG ACTGAGGCCG ACTGAGCCAG AGGCACCACT TCAATAGGTC ACTGGTCTCT GCAGGGAAAG GAAAAGGTGT 000800 000801 AAGAGTTCTC CCTGCATAGA TGCTATTTGT GACTTGGATG TTTTCTTTCT AATACAAATG CATCAAAGTG TTCACAGGAA 000880 000881 TCTAGCTATA TGCAAGAAGT CTGGATTATC TGCCTGAGAG AACTGGCCAG TATCTCACCC ATGAGCACCA GAACCCATTT 000960 000961 CTAGATTACT AAGAAAGGAG CACAAGAACA CTGTGTATAA GGCTCTGTGT TCCTAGAACT TTCTAAATTT TACTTAATGC 001040 001041 AGGTTAACTT CATCAACCCT GGTGAAAATG CCACCTCCTC ATGAGGAAGC CTTCCC |