Difference between revisions of "ENST00000417473.2"
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==Annotated Information== | ==Annotated Information== | ||
| + | ===Name=== | ||
| + | LINC00570 | ||
| + | |||
| + | ===Characteristics=== | ||
| + | Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product. | ||
| + | |||
| + | ===Function=== | ||
| + | LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells). | ||
| + | |||
| + | ===Expression=== | ||
| + | Expressed in HeLa cells. | ||
| + | |||
| + | ===Conservation=== | ||
| + | Please input conservation information here. | ||
| + | |||
| + | ===Misc=== | ||
| + | Please input misc information here. | ||
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===Transcriptomic Nomeclature=== | ===Transcriptomic Nomeclature=== | ||
Please input transcriptomic nomeclature information here. | Please input transcriptomic nomeclature information here. | ||
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===Regulation=== | ===Regulation=== | ||
Please input regulation information here. | Please input regulation information here. | ||
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===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
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}} | }} | ||
[[Category:Intergenic]] | [[Category:Intergenic]] | ||
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Revision as of 02:22, 11 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Name
LINC00570
Characteristics
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.
Function
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).
Expression
Expressed in HeLa cells.
Conservation
Please input conservation information here.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000417473.2 |
| Source |
Gencode19 |
| Same with |
lnc-GREB1-4:1,NONHSAT069164 |
| Classification |
intergenic |
| Length |
1330 nt |
| Genomic location |
chr2+:11534107..11543203 |
| Exon number |
3 |
| Exons |
11534107..11534297,11540498..11540583,11542151..11543203 |
| Genome context |
|
| Sequence |
000001 CGGAAGAGTG GGACGTTATG GAACCTTCTC AGCTTATTCA GAGAGGCTTC TTCTTCCTAT TTAGTCTCCC TCTGGCTTTC 000080
000081 CCTGCTGGGA TCTGGGTGGT AGAAGCAGCA GGGGGATCAA CGAACAGGCT GAGCGCCAAG AAGCCTGAAG ATTCCAGAAT 000160 000161 CTAGCGGGAA AAGCATTCAG AGTCAGAATG AGCCACTTCC AGCATCGATG GTGTCAGGTC AGGTCCTCTG GGTAGAAGAA 000240 000241 ATGGAGTCAG TTAGGAGTGC TGGAGACTGA GTAAGAGGTG GCAGCTGAGG CTTACTACCC CAGGAAAGGG ATGCCACCAG 000320 000321 AGAAGGCAGA CAACCAAGAT GGCGACTCTC AATTTTTGAG CTCCTAATTT TCTCATGTCA GACATAAGAA AAAAAAATAT 000400 000401 TTTTTAAAGA AAAAGCTTTA GGTTGCAAAA ATCTAGGCCT TTCAACTTTA AAATCCTATT CTTGCAAGCC TTGGAGAATA 000480 000481 AAGCTTATGC ATAAACAGTA GATTTGGAAA CAGAAATATG CCTAATTACC CAGAGCCATT CTTTCAATAC GCCAGTGATT 000560 000561 GTTTAAAGAT TCTATAGGCT GGAGTCAATG GCAGGAGGCG GGTGGGAAAA GAGTCAAGAG GGAGGAGAGA AGAAGCAAGA 000640 000641 GGGTTGGGTA GATATTGTCA CATGACCCTG AGAGGAGGAT TCTGGGTCAA ACCCCTAGGG GGTTGTGTGT AATGGAGACT 000720 000721 CCAGATCCAT TTGGGAATCT GGCTCCAAAG AAGACTTCAC CTTGCCTTCT GAGTGGAGCC CTGAAGTGGC AAGACTCATA 000800 000801 GAATTCCCCC ACGGGTCCAC ACAAGAGAGA ATGAATAGAG AAGGCTGCGT GCTGGCTGGA CCAAGGCAGC CTCGGGTGAC 000880 000881 ACCACCACCA CCACCGCCGC TGCCGCCATC GCCATCACCA CTGCCGCTGC CATCACCGCC ACCACCACCA CCATCACCAC 000960 000961 CACCATCACC ACATTATGGA CAATAGCCCA ATGTTTCCTG AGTTCCCTAG AGGGTTGAAA GAGAATAGGA CCTAGAGAGA 001040 001041 TCACATAGTT GGGACAGGCA CTCATTAATT TGATCCAATG ACAAGAGACC AGATGGGAAG AAGGATGCCT TGAGAGATGT 001120 001121 CAGTGTGCAC CCATGGATAG AAGCAGCTGG TGACTGGGTA CTTGGGAAGC CACATGGACA CACACAAAGC TCCTGGAAGA 001200 001201 CGTTTTCAAG GAGTTGGGCT GTGCTGGGAT CCAGAACTGG CTGAAGAAAC CATGAGCTGA CATAAAATTT CTGCCACCTA 001280 001281 GCAGAATGGA GGCTCCATTT GGAAATTAAA TTATATACTT AAAAAAACTA |
