Difference between revisions of "BISPR"

From LncRNAWiki
Jump to: navigation, search
(→‎Chromosome)
 
(One intermediate revision by the same user not shown)
Line 4: Line 4:
  
 
===Chromosome===
 
===Chromosome===
 +
[[File:LncBST2 controls the expression of BST2 mRNA..jpg|right|frame| LncBST2 controls the expression of BST2 mRNA.<ref name="ref1" />.]]
 +
 
19p13.11
 
19p13.11
 +
 
===RefSeq ID===
 
===RefSeq ID===
 
NR_130765
 
NR_130765
Line 34: Line 37:
 
| | GACUAGUGUGAGCAACAAA <ref name="ref1" />
 
| | GACUAGUGUGAGCAACAAA <ref name="ref1" />
 
|}
 
|}
 +
 +
==Labs working on this lncRNA==
 +
* Department of Gene Therapy and Hepatology, Center for Applied Medical Research (CIMA), University of Navarra , Pamplona , Spain <ref name="ref1" />
 +
 +
<references>
 +
<ref name="ref1">Barriocanal M, Carnero E, Segura V, Fortes P. Long Non-Coding RNA BST2/BISPR is Induced by IFN and Regulates the Expression of the Antiviral Factor Tetherin[J]. Frontiers in immunology. 2014,5:655.</ref>(1)
 +
</references>
 +
 
===Sequence===
 
===Sequence===
 
>gi|751557665|ref|NR_130765.1| Homo sapiens BST2 interferon stimulated positive regulator (non-protein coding) (BISPR), transcript variant 1, long non-coding RNA
 
>gi|751557665|ref|NR_130765.1| Homo sapiens BST2 interferon stimulated positive regulator (non-protein coding) (BISPR), transcript variant 1, long non-coding RNA
 
<dnaseq>GAAGTGCTCTGACCAGCAGCTCTTGCATGAGGCACCTACAGGCAGAGGATTAATTAGGTTTTCAGTTTCAGTTTCCCAGAAAGGAGGTGGGCTTTTTTTTCACCCTGCTTTAAAAGCCCTTGGGCCCTTCCCAGCTGGGTGCCAGCCAACTGTGGCTGCCTGGGACACTCCATCTTAAGTCCCTGTGCCTCTGCTGTGTGTTACTGAGTGCCTAGGCCGTGCCAGCCTGTATTCATCTGTACTATGACCTGAAGAGGCAGAGGCCATCACTGTTGGTCCGGTCTCCACCTGGGGAAACTGAGGTTGCACAGTGTCTCTGTGGTGACGAGCAGGGCTTCATCCAGTGCCTCTGTCCCCACCGAGGGGACTATGGGAGACATGGAGGGTGTGTGAGCAACAGGTGAGACTGGAGCCAGCTGAAAACTGGGAGACCGACCCAGCCAACAAACAATGTCGGTCTCTGTCTTGGCACCTGCAGGAAACAAGCTCCTACTTCCAGAAAAAGTGCTCCTGGGACTCCAGGATACCAGGCATCTGGACGCGGTGGTACATGCCTGTAATCCCAACACTTAGGCAGGAGGATCACTCGAGCCCAGAAGATCAAGACTAGTGTGAGCAACAAAATCCTTCCCTGGCACCGGTTCCAGGAGGACCTCGTTCTTAGGCAGCATCTGTGTCTCTGTTTTGTAAGACACACAGAGTATCCTTAACCCACTGCAGATATTTCCCTGGGTCCATGGTCAATCAACACCACCTTTCAGTCTCCAGCCTCTTAACCAGCCCAGGGCTGAGTGTTGTTTATAGTATTAATATGTTTCTGGCTGGGCTCAGTGGCTCATGCCTGTAATCCCGGCACTATGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTAAAACCCCGTCTCTACTAAAAATACAAAAATGAGCCGGGTGTGGTGGCGTGTGTCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGCTACAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCAAGAAAGTGAGACTCCATCTCAAAACAAAGAAACAAACAAAGTATTAATATGTTCCCCTTGATCAGTGGGGTGGTTCACCCTTGTAATCCCAGCACTTTGGGAGGCAGAGGCTGGCGGATCGCTTGAGTCCAGGAGTTCGAGACCAGCCTGGGTGAACTAGCAAAACCCTGCCTGTACTAAAAATACAAAAATTAACTGGGCTTGGTGGTGCGAGCCTGTAATCCCAGTGGAGGCTGAGACAGGAGAATCCTTTTGTAATGCCTGACCTTGTTTTTTTACTAACCCTATTTTAACCTTGTTTTTACTAACCCTATTTTTAAATTTTCCCTTTTTGTCTCCTTAATTACCTAGCCTTGTTTCCCATATGAGTAGACTCTCCCTTAGCTGGGAAAGCCTGACGAACGCCATCTGGCCCCTTGATTTACAAGACATTAAGGGCTACTTACCCAACCCCCTTCCTCAAAGAGTTAACCTGCGTAAGCAGATCCTCAGCATTTCAAAGGAGCCCAATTAGCTGATAAGGTACTGGAACAAACAATGTACGAAGTTCCCAGGATTTTGCTCAAAAGCATAACAACATAAAGCCTTGAGTCTGTGTCTGGCATAGCATCCATATCTAACTCTTATGAAGGATTTAGAGCCCGGCACCTGGTTCCGTTGCTTTTTTTGTAACCATTTGTCTTTTAAATTGTTTATTTCTCTGTAACCATTTGTTTTTTGATTCTTGCATGTTTTTACTTCTGTAGAATTATTGCATTTGAGCTCCGCTCCCCTTCCGAACCAAGGTATAAAAGTAAATCAAGCCCCTTCCTCGGGGCCGAGAGAATTTTGGAAAGTCAAGCCTTCTCTTGGCTGCCGGCTTAAATAAAGGACTCTTAATTCGTCTCG</dnaseq>
 
<dnaseq>GAAGTGCTCTGACCAGCAGCTCTTGCATGAGGCACCTACAGGCAGAGGATTAATTAGGTTTTCAGTTTCAGTTTCCCAGAAAGGAGGTGGGCTTTTTTTTCACCCTGCTTTAAAAGCCCTTGGGCCCTTCCCAGCTGGGTGCCAGCCAACTGTGGCTGCCTGGGACACTCCATCTTAAGTCCCTGTGCCTCTGCTGTGTGTTACTGAGTGCCTAGGCCGTGCCAGCCTGTATTCATCTGTACTATGACCTGAAGAGGCAGAGGCCATCACTGTTGGTCCGGTCTCCACCTGGGGAAACTGAGGTTGCACAGTGTCTCTGTGGTGACGAGCAGGGCTTCATCCAGTGCCTCTGTCCCCACCGAGGGGACTATGGGAGACATGGAGGGTGTGTGAGCAACAGGTGAGACTGGAGCCAGCTGAAAACTGGGAGACCGACCCAGCCAACAAACAATGTCGGTCTCTGTCTTGGCACCTGCAGGAAACAAGCTCCTACTTCCAGAAAAAGTGCTCCTGGGACTCCAGGATACCAGGCATCTGGACGCGGTGGTACATGCCTGTAATCCCAACACTTAGGCAGGAGGATCACTCGAGCCCAGAAGATCAAGACTAGTGTGAGCAACAAAATCCTTCCCTGGCACCGGTTCCAGGAGGACCTCGTTCTTAGGCAGCATCTGTGTCTCTGTTTTGTAAGACACACAGAGTATCCTTAACCCACTGCAGATATTTCCCTGGGTCCATGGTCAATCAACACCACCTTTCAGTCTCCAGCCTCTTAACCAGCCCAGGGCTGAGTGTTGTTTATAGTATTAATATGTTTCTGGCTGGGCTCAGTGGCTCATGCCTGTAATCCCGGCACTATGGGAGGCTGAGGCAGGCGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTAAAACCCCGTCTCTACTAAAAATACAAAAATGAGCCGGGTGTGGTGGCGTGTGTCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGCTACAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCAAGAAAGTGAGACTCCATCTCAAAACAAAGAAACAAACAAAGTATTAATATGTTCCCCTTGATCAGTGGGGTGGTTCACCCTTGTAATCCCAGCACTTTGGGAGGCAGAGGCTGGCGGATCGCTTGAGTCCAGGAGTTCGAGACCAGCCTGGGTGAACTAGCAAAACCCTGCCTGTACTAAAAATACAAAAATTAACTGGGCTTGGTGGTGCGAGCCTGTAATCCCAGTGGAGGCTGAGACAGGAGAATCCTTTTGTAATGCCTGACCTTGTTTTTTTACTAACCCTATTTTAACCTTGTTTTTACTAACCCTATTTTTAAATTTTCCCTTTTTGTCTCCTTAATTACCTAGCCTTGTTTCCCATATGAGTAGACTCTCCCTTAGCTGGGAAAGCCTGACGAACGCCATCTGGCCCCTTGATTTACAAGACATTAAGGGCTACTTACCCAACCCCCTTCCTCAAAGAGTTAACCTGCGTAAGCAGATCCTCAGCATTTCAAAGGAGCCCAATTAGCTGATAAGGTACTGGAACAAACAATGTACGAAGTTCCCAGGATTTTGCTCAAAAGCATAACAACATAAAGCCTTGAGTCTGTGTCTGGCATAGCATCCATATCTAACTCTTATGAAGGATTTAGAGCCCGGCACCTGGTTCCGTTGCTTTTTTTGTAACCATTTGTCTTTTAAATTGTTTATTTCTCTGTAACCATTTGTTTTTTGATTCTTGCATGTTTTTACTTCTGTAGAATTATTGCATTTGAGCTCCGCTCCCCTTCCGAACCAAGGTATAAAAGTAAATCAAGCCCCTTCCTCGGGGCCGAGAGAATTTTGGAAAGTCAAGCCTTCTCTTGGCTGCCGGCTTAAATAAAGGACTCTTAATTCGTCTCG</dnaseq>

Latest revision as of 08:37, 28 June 2016

Annotated Information

Approved Symbol

BISPR:BST2 interferon stimulated positive regulator (non-protein coding)

Chromosome

LncBST2 controls the expression of BST2 mRNA.[1].

19p13.11

RefSeq ID

NR_130765

Ensembl ID

ENSG00000282851

Function

BISPR regulates the expression of BST2

BISPR and BST2 are induced after infection with HCV or influenza and VSV mutant viruses that activate the IFN respons

Expression

BISPR showed a higher upregulation at later times post-IFNλ treatment. inhibition of lncBST2 expression by RNAi leads to decreased levels of BST2 mRNA, providing a new layer of regulation of the IFN response.

Primer Forward primer Reverse primer
RT-PCR CAGTGATGGAGTGTCGCAAT CCTCAAGCTCCTCCACTTTC[1]
knock down BISPR siRNA GACUAGUGUGAGCAACAAA [1]

Labs working on this lncRNA

  • Department of Gene Therapy and Hepatology, Center for Applied Medical Research (CIMA), University of Navarra , Pamplona , Spain [1]
  1. ↑ 1.0 1.1 1.2 1.3 Barriocanal M, Carnero E, Segura V, Fortes P. Long Non-Coding RNA BST2/BISPR is Induced by IFN and Regulates the Expression of the Antiviral Factor Tetherin[J]. Frontiers in immunology. 2014,5:655.

Sequence

>gi|751557665|ref|NR_130765.1| Homo sapiens BST2 interferon stimulated positive regulator (non-protein coding) (BISPR), transcript variant 1, long non-coding RNA

000001 GAAGTGCTCT GACCAGCAGC TCTTGCATGA GGCACCTACA GGCAGAGGAT TAATTAGGTT TTCAGTTTCA GTTTCCCAGA 000080
000081 AAGGAGGTGG GCTTTTTTTT CACCCTGCTT TAAAAGCCCT TGGGCCCTTC CCAGCTGGGT GCCAGCCAAC TGTGGCTGCC 000160
000161 TGGGACACTC CATCTTAAGT CCCTGTGCCT CTGCTGTGTG TTACTGAGTG CCTAGGCCGT GCCAGCCTGT ATTCATCTGT 000240
000241 ACTATGACCT GAAGAGGCAG AGGCCATCAC TGTTGGTCCG GTCTCCACCT GGGGAAACTG AGGTTGCACA GTGTCTCTGT 000320
000321 GGTGACGAGC AGGGCTTCAT CCAGTGCCTC TGTCCCCACC GAGGGGACTA TGGGAGACAT GGAGGGTGTG TGAGCAACAG 000400
000401 GTGAGACTGG AGCCAGCTGA AAACTGGGAG ACCGACCCAG CCAACAAACA ATGTCGGTCT CTGTCTTGGC ACCTGCAGGA 000480
000481 AACAAGCTCC TACTTCCAGA AAAAGTGCTC CTGGGACTCC AGGATACCAG GCATCTGGAC GCGGTGGTAC ATGCCTGTAA 000560
000561 TCCCAACACT TAGGCAGGAG GATCACTCGA GCCCAGAAGA TCAAGACTAG TGTGAGCAAC AAAATCCTTC CCTGGCACCG 000640
000641 GTTCCAGGAG GACCTCGTTC TTAGGCAGCA TCTGTGTCTC TGTTTTGTAA GACACACAGA GTATCCTTAA CCCACTGCAG 000720
000721 ATATTTCCCT GGGTCCATGG TCAATCAACA CCACCTTTCA GTCTCCAGCC TCTTAACCAG CCCAGGGCTG AGTGTTGTTT 000800
000801 ATAGTATTAA TATGTTTCTG GCTGGGCTCA GTGGCTCATG CCTGTAATCC CGGCACTATG GGAGGCTGAG GCAGGCGGAT 000880
000881 CACTTGAGGT CAGGAGTTCA AGACCAGCCT GGCCAACATA GTAAAACCCC GTCTCTACTA AAAATACAAA AATGAGCCGG 000960
000961 GTGTGGTGGC GTGTGTCTAT AATCCCAGCT ACTCGGGAGG CTGAGGCAGG AGAATTGCTT GAACCTGGGA GGTGGAGGCT 001040
001041 ACAGTGAGCT GAGATCATGC CACTGCACTC CAGCCTGGGC AAGAAAGTGA GACTCCATCT CAAAACAAAG AAACAAACAA 001120
001121 AGTATTAATA TGTTCCCCTT GATCAGTGGG GTGGTTCACC CTTGTAATCC CAGCACTTTG GGAGGCAGAG GCTGGCGGAT 001200
001201 CGCTTGAGTC CAGGAGTTCG AGACCAGCCT GGGTGAACTA GCAAAACCCT GCCTGTACTA AAAATACAAA AATTAACTGG 001280
001281 GCTTGGTGGT GCGAGCCTGT AATCCCAGTG GAGGCTGAGA CAGGAGAATC CTTTTGTAAT GCCTGACCTT GTTTTTTTAC 001360
001361 TAACCCTATT TTAACCTTGT TTTTACTAAC CCTATTTTTA AATTTTCCCT TTTTGTCTCC TTAATTACCT AGCCTTGTTT 001440
001441 CCCATATGAG TAGACTCTCC CTTAGCTGGG AAAGCCTGAC GAACGCCATC TGGCCCCTTG ATTTACAAGA CATTAAGGGC 001520
001521 TACTTACCCA ACCCCCTTCC TCAAAGAGTT AACCTGCGTA AGCAGATCCT CAGCATTTCA AAGGAGCCCA ATTAGCTGAT 001600
001601 AAGGTACTGG AACAAACAAT GTACGAAGTT CCCAGGATTT TGCTCAAAAG CATAACAACA TAAAGCCTTG AGTCTGTGTC 001680
001681 TGGCATAGCA TCCATATCTA ACTCTTATGA AGGATTTAGA GCCCGGCACC TGGTTCCGTT GCTTTTTTTG TAACCATTTG 001760
001761 TCTTTTAAAT TGTTTATTTC TCTGTAACCA TTTGTTTTTT GATTCTTGCA TGTTTTTACT TCTGTAGAAT TATTGCATTT 001840
001841 GAGCTCCGCT CCCCTTCCGA ACCAAGGTAT AAAAGTAAAT CAAGCCCCTT CCTCGGGGCC GAGAGAATTT TGGAAAGTCA 001920
001921 AGCCTTCTCT TGGCTGCCGG CTTAAATAAA GGACTCTTAA TTCGTCTCG
Retrieved from "https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=BISPR&oldid=1271939"