SVIL-AS1

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Annotated Information

Name

SVIL-AS1：SVIL antisense RNA 1

RP11-534G20.3 and ENST00000438399[1]

Characteristics

ENST00000438399 is a 3307-bp intergenic lncRNA transcript from the RP11-534G20.3 gene located on chromosome 10: 29698475–29713107.[1]

Expression

The expression of ENST00000438399[1].

ENST00000438399 is down-regulated in the RA(rheumatoid arthritis) FLSs(fibroblast-like synoviocytes) compared with normal FLSs. In addition, ENST00000438399 expression is positively correlated with PTPRQ mRNA expression and negatively correlated with PTHLH mRNA expression [1]

Diseases

Rheumatoid arthritis [1]

Sequence

>NR_110920.1 Homo sapiens SVIL antisense RNA 1 (SVIL-AS1), transcript variant 1, long non-coding RNA

000001 GCACATGCGC GGCAGCTCCC GCTGCTGAAT AGCTGAGAGG CGCACCCGGG CGGCCAGCTG GGCTCGGAGT GCAGCGGGGT 000080
000081 TAGGATGGAC GAGGACGTGT TGCACCCTGA AGAGCCTCAT CATCGGTGAG AGTGGGGTGG GCAAGTCCAG CCTGCTCTTG 000160
000161 AGGTTCACAG ATGATACCTT TGATCCAGAA CTTGCAGCAA CAATAGGTTC ACCTGCTTCC AGGCGGGCAG GGCGTTGTAT 000240
000241 TCATCCCTCG TCATGTCTAG TGCAAACTGG AAACATTGGG AGAAGCGCCC CGCGGCTCAG TGAAAGGAGC CGGGCGTGCG 000320
000321 TGTGTTGTTT TACTCCCATC CCCACCCCAC CGGAAGAACC GCTTACCTCG AAGTCTTCGT CGGTGAGATA GATCTCAAGC 000400
000401 TTCAGAGGAT CGACCCCCTC CGGGAGTGGC CTGGCCAGGA GGTCGGCCAG CGGATCCATC TTCGGTTGTG AATCCGGCCC 000480
000481 GGAATGCAGC CACCCCTTAG AGCAACCCCC CTTGCTGCTC GTGCCCTGCT GTGCTACTGC CTCAGTCACT TCCTGCTTGG 000560
000561 TCAAGACCAC AGCTGCTGAT GTCACAGCTG AGGCACATCA GAAAGGCTGC CTGATTCAAA GAAAGCTGCC GGATAAATCA 000640
000641 TAGAGCACAG ACACTTCTAC CTCATGCTCT TATGGGACTT TAGGAACCAA ACATAAGCAC CTATGGAAAA TGCACGGCGG 000720
000721 TCTTGAAAGG CTGTGGTCTT TATCAGAAAA TATCTGAATG ACTGTTTGTT ATGTCAGTCC TACTCTGCAG GCTTGCTAAG 000800
000801 ATGATGATTG AAAGGGCTCT TGGTTTCTGC TTTGGAATCT GGCATTTATG TTTTGAAGCG TTGTGAGCAA GCGATGTGGC 000880
000881 AGATTGCAGG GTGAGGGGGA CAAACCTGGG CCAGGAGCCA GGGGTTTCTC TACCCCCTTC CCTGACTTAC AGCTGGAACT 000960
000961 GGGCTCAGTG GTTTCAGCCT CATTTGCTAA GAAGGTCTGG GTATGTAATC CTGGCTGCAT CTTAAAATCC CTAGGAGCTT 001040
001041 TTAAGACATA TTGACACATA AGCTCTAACT CACATGAAAC GAAAACACAT CTCTGGGGCT GGGCTGAGCA AATGCATTTT 001120
001121 TTAAAAGGCC CCTCAGGTGA TTCTGTCTCA GAGATGTTGA AAACCAGTGG GTTAGGAGCT CAGTCATCCA CTTTCAGATC 001200
001201 TGTGATTATG CCACTATTAA ATACAGTTGG CTATCACATA GATTTTATGC TTTAGCTTGT TCTTTTTTCC TTTGCTATAC 001280
001281 CAAATAAAAT CTTCTGAGCT GTAGTTCCAG TCCTTAAAAT AATGGTTGTT ACCATACTGA GGTTAAACAT TAGTGCATTT 001360
001361 GCTTAACAAG GACTTTAAAA CTTATCACAC TGCCATAATT TTTAATGGTT TCTATAATGA TTAATTAATA AGAAAATCAA 001440
001441 TAATTGGATT TTAAGCAGGA AACTAGGCAG GAAAGTTGAA ATTCATAGAC CAATTCAATG GAAAACATTA AAATGTATTG 001520
001521 GGAGATGCCC AATATTCTAT GCTGTTTGGT GGTTCACTGG TTTCTAATCT ATTATAACGG CACCCATAGT TAAAAAGCAC 001600
001601 TAGTTTTTTT TTGGTCTGAT AGTTGAAAAA ACAACAATCC TTTGCACGTA GGAATTATTT TTTCCAACAT CATAATTTCT 001680
001681 GACTTTGCAC ATATTCTATT GAATTGCCAA AATGACTTTA AAGAGTCTAG TACATGCAGG GAATATTACA ATTGCAATCA 001760
001761 TTATTTTAAC ACCATCTCCT CCCCCTCTTC CCTTCCCAAA AGATATAAAG ACATAAACAT CATCTGCTGC CAAATAAATC 001840
001841 CTGAAATTCG AGGGCGATGC TGGGAAGGTA TGAAATTAGA GGGAGGCATG TTGCTTTTGC ACTTTCAGAT CAATGGCTGA 001920
001921 ATTCCAGACC CGGGGAAGCC TTTCAGATCC GCATGTAATT TGTTTAAACA ATTGCTGTTC ATCTGCCACA GCAGCACTTG 002000
002001 TAATGCCGCA GGGAGGAACT TGCAGCATTT CTTGCTCACT TCAAGAAATC AACTATAACA AACCTCTTCC AGAAGACTAC 002080
002081 GACATCCATA TTTCTGCAAT AGTTAGATAA AAGTTAAAGA ACTGTTCCTT TTGTGAATAT TCACAGTCCA CTGCATATAA 002160
002161 TCGTTTATGA AAACTGAACC CTATAAAGAG CGAGAGTAGA GGACTGTGGT GAGAACAGAG GGATCGAAGG GAATCAGCTC 002240
002241 GCTTGAAGAG CTGTCCCCGG GCGGCGGCAG GAGTACCTGG GGATAAGCGG ATTGCATTCT CCAGGATCCA GGGGATTGAT 002320
002321 GTCACAGTTC TCATAGTCAA AGGTTCCATT CCATAAGTGC TTTGCCAGCT GAAATGCTAT TTTTCGTTGT GCTAATGTGA 002400
002401 CTTCTTTCCC ATGCCATACG TAAACTTCAC TACCAAAATC AAACACCAGT ACCTGGGAGA AATGGCACAA AAGAATTTGT 002480
002481 TAACTTCAAG AACATGCAAC AGTTGAATCA GGTGCAACAG GGTCTCTTGT TGACAGTGAG TCAAACGGAG GAAGACAGAA 002560
002561 ATCCTAACGG GGCGACCAAC ACAGACACAA AAAGGCCAGG AGATCTCAGC TGGCACTGCC CCACCGAGCC AGCCTCTGCC 002640
002641 CTGCGGGCAC GATTCCTCCT CCCAGTGTCC TAAGTGGCCA GGATAATGTT CCCTCCTCTG AACTCTCAAC CTGCTTACAA 002720
002721 CTTGCGATTC ACAAGAGTTC TTTAGGTACA TCTTCCTGTC GACTTCCTGC CTCTCTCCCC TATTCCTCCC CCTCTCATGT 002800
002801 GCTCATTCAT TCACTTAATA TATACACAGA GGCCACTTCA TATACCGCAG GCACTCATGG TCCAGTGGTG TCTTCTCTCC 002880
002881 AGTACACAAT TCCAAGATCC TTAAGGGCAG GGATCAGATC ATGGTGATAC ATACAGGAGG GGTTGATTAC TAAGTGTTTG 002960
002961 CTGAATGAAT ACATGAATGT AATGCTATTT CTTATGTTCA TGGTTCATTT TATTCTTTCT CCTAGAATGA GTTCTCCCTT 003040
003041 CACTTCCAGC AATTCAAATT TTGCTTAACT CTAAACTAGG CTCAATTTCA CTTTCTATGT AAAATTATTC CTGAAGGTTT 003120
003121 CTTTTTCTGT GACTTTTCCC TCATGTAAAT GCCCATACAT GTCACACAGT CAACCTTGCT CCAGATTACA TTCCTTCTAA 003200
003201 TACTCTTCCA CCCAATTAAA CTTAAGGGCC TGCGTGTCTT CCACTTTCTC AACACTTAGC ATGCTTAATG ATACTGGAAA 003280
003281 TGTATGTAAT TAATAAATAT TTACTGCTGT GACAGGACAA AAACAGCAAA AAAAAAAAAA AAAAAAAA

Labs working on this lncRNA

  • Department of Clinical Laboratory Science, Jinling Hospital, School of Medicine, Nanjing University, 305 East Zhongshan Road, Nanjing, 210002, China.

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Zhang Y, Xu YZ, Sun N, Liu JH, Chen FF, Guan XL, Li A, Wang F, Zhao QF, Wang HY, Song SS, Yu W, Zhao JN, Li XJ. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. Arthritis Res Ther. 2016 Oct 6;18(1):227.
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