NONHSAT146517
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146517 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3512 nt |
Genomic location |
chr17+:19577397..19580908 |
Exon number |
1 |
Exons |
19577397..19580908 |
Genome context |
|
Sequence |
000001 TTTTAAAAAA AGGTTTGACT TTGGAATTCA TGGCAGCAAA TGTCGTGAAA TCAAGGTGTA GTATACAATT TAGGGGCTAC 000080
000081 TTTCTTTGCC TTCCTGAGGC TGGAGGTGTG GTCGGAAGCT TACTTGGGTC TCTGGTCAAT ATCTGTCTCT TTTGTTCTTT 000160 000161 TCCCAAGACC TCGGTTCCTC AGTTTGATAA TGCATCTTGG TAGGATAGAA TATTTTAGCC TCATGGAAAA TACGGAGGCC 000240 000241 CAGGCTGAGT CTGCATTCTC CAATCTTACC AAACCCCCAA GAAGCCTCCC TCAGGTGCAG TGCAGTGTGC CAGGCAGGTT 000320 000321 CGAGTTCCCA AAGGGTTTGG CAGGCATGTT TCTCTGTGAG GGTCTAGAGA AGCAGCAATA TATAAAAGAA GCAGCAATAT 000400 000401 ATAAAACCTT TAGCAGAAAC AAAAAAATGT GGTTTGATTC ctggctcaat gaacttgggc aaggcctttt ctgagctctt 000480 000481 tcttgggcct cagcttgctc atctacaggg tgagggagta ggtgtcagtg attccccagg ccactttcaa ccctTCCGCT 000560 000561 CAATTCTCAT TACTAATAGT TGTTAATATT TCTTTGGATT CAATCTGGAA CTAGGTAGAG ATTTGGTTTT CTTTTCCACT 000640 000641 TTGCTGCTTT TCTGCTCCTT TCTGAGCTTT TAATCCTCTT TTTATCAAAT TACCTTTTAT TTAAAATAAA TGACTTTGAA 000720 000721 TCTGTACTGT ATATTTACCT GAATAGTCTA TTTATTGTAA TTACATTTTT CTGAAATGGC TTTTATGTAC TTAATAGTTT 000800 000801 CCTTATTTTG TTACACTCTT GGATTTTATT TTATTAATTA CCTTACTAGA ATTAGAAGGG ATTTAGAGCA GAAGTATTGT 000880 000881 ACACAAAGTA AAGTTCCAAT AAAGCTTATA AGCTACAGAA GGCATTGTGG GAGATGTGGG TTTTAAAAGG TCGAGAAACA 000960 000961 TAAGAGGTTA ATGTTGATAA ATTTCATTAG GCCTTTGACA ACTAAATATG ACATTTGAAC CTTGAGATTG CAGCAGCCCT 001040 001041 TCCTCAGTCT TCAATAGGAA GGATTAAATT CAGTACTACT TTTGAATTTT AGAAACAAAA TTGTATACCA GTTTTTGAAT 001120 001121 TCCATGTAGA GACTTCAGCT TCCTACTGAA AATGCTAGGA TAATAAGTTA GTACTCTCAT CTTCTGTCTC TACTCTGACA 001200 001201 TTAGCTAGTT GACAGTGGAC AGAATATAGC CTTCATTATC ACGTTGTCTT ACTCTTATTG TTATTGTTGT TTTTTGAGGA 001280 001281 AGGGCATAAT CCTTTGGCCT AAACCGTGCT TCCTAGGCTT CCTAGGGATA TGTAGTCCTT TTTTGTACAA TGCATGTAGA 001360 001361 GTCTCTTCAG ACAGGAGGTG TCTGAGTCCC AGTGCTGAGC TTGTGTTGCA AGGCTGGTTG TGGGTAGGTT TTTAAAGCAG 001440 001441 CTGAGTAAAC TGAATCCTTT TTTCCTCTCT CCAGGCAGAA TATTACTGAA GAATGATCCT GTTCAACCTC CTAGTGCCTC 001520 001521 TACTGAATTA TTCCTCTTTT AAATGGTTAA TGAACCAATA ATTTTTAAAT CATACCAAAA ATAGTAAGAA AATATGCAAA 001600 001601 CACTCTGTGA TCAAACTTAA AAGTCATTGC CATTCATCAT TAATAAAAGT TGCCATTTCA ACTACGTCCC AACATTCCCT 001680 001681 AATAGGGTAT TCAGGGAACC TGTCTTAAAT TGTGCTTATC TAAATCTTGG AACTTTGAGC TAGGGGAGGA GAATGTATTA 001760 001761 GACTAAATAC AAACTGCGGG GTTGTAAGGG AGTCTCAGAA CCTCACTGAA TCCTTCACTC CAGTTAATGG CACTGCTCAC 001840 001841 TTCCTGCCTC TGCTGCCACC ATCACTGTGT GAAGCTTTCA AGAGCTTGGT ACTTCCCAGG GCTACCGGCA GTCCTCTGTA 001920 001921 GTCCAGAGAG GTGAGATTAG ATCTTCTTGG TTCCCTGTGA GGTTTCAGGC ACTAAAACTC TATGTGGGGA AGGGAGGGGT 002000 002001 TACTCCTCCT CCAATGGGAC TCAAGGACTT GACCTCCAGG AGTAGGCCCC TGGTCAGAAG TGCCATCTCA CCAGTGGTCT 002080 002081 TCATTCTTCC TCATTCATTC TTTATCATCC TGTGTTCTGT TTAGTTGCAA CAATCTCTTG TGACTAATGT CACTCAAAGC 002160 002161 ATCTTGTAAA TCCTAGGGCT TCCTGGAAGT TAGTTGCCAA AGTCATGCAA GCATCACCTG TCATTCTTGT GTTGGAGTTA 002240 002241 TAGAATTCTA CATCTTATAA AACCTAACTG GCATTTAAAA AATACTGTgg ccgggcgtgg tggctcatgc ctgtaatccc 002320 002321 agcactttgg gaggccgagg tgggaggatt gcttgagtcc aggaatttga gaccagcctg gacaacacag tgagacctca 002400 002401 tctctatcaa aaaataaaaa ttagctagat gtggtggcat gagcctgtgt tcccagctgc ttaggaggct gaagcaggag 002480 002481 gattgattga gcctgcgagg ccaaggctgc agcaggctgt gattgcacca ctgcacttca gcttgggcaa cagagcaaga 002560 002561 ccctgtctcc gaaacaaata aaaaaTACTG TAATAAAAGT ACTTATAAAC ATACTAATCC TCTTTCAGGA CCCTAAAGTT 002640 002641 GCAGGTTAGT AGGTCTTCAA GGACAAATCT GTAAGTTTCT TATTTCTGTA GTGCAAGTAA AATTTCACTT TTTGAAACTA 002720 002721 TAGAGAGATC CCTTTCTGAT TAGCCTACAG AACTTAAAGT GAGGGAACCA TTTCCTCTCA CAGACAAAGA GGCCTGGGAT 002800 002801 ATTAGGACTT TGGGGTTTGA GAGCATCATG GGGCAGACAG ATGGTGGATG GTCTGGACAA GAAGCGAGTA AGCCACTGCG 002880 002881 GTTGGTCATA CTGAAGGGAA TTGATGGCAA GAGGATCCCC TGAGCAAGTC AGAAGTTACT CTCATCAGTC GTTCATGGTC 002960 002961 ACAACCTGAG GTACTCTGCT GAGTGGGCAA GGCTGAAGAA GAGGCCTGTG GAATGCAGCA TTACCTGCTG GACAGAGCAG 003040 003041 GGCAGGCAGT TCTATGCCTT GGAGCTCCTG ACTGCAGGGA CTCTGTCCCC ACACTCAAAA AGACTCAGCT CACTCAATGA 003120 003121 GAGAATGTGA TTTACTTTAT AGAACGTATA ATCAACTTTG TTGAATAATT TGTTCTATTA AGGCTGTCTA AAGTATGTGA 003200 003201 TGTCTTCATC ATAGTATGAA GTGTTGAAAA TTAATAACGA GCCTAGTTTA GGAAAAAGCT GCTTAAAACT GTGGCTCTAA 003280 003281 GAGAGTAATC ATAAAATACC TTAGATAAAA TTGCACTATG GAATTTTCAT TGAGTATGTT TAAATTATTG GCTTGTCTAC 003360 003361 TAATACACAT CTGCTTCAAA ATGAACATAT TTCATAAAAT TGGCATCAAT TTTAATGACG CTCCTGGTAT GGAACCTCAG 003440 003441 ATATACCCTA TTGGAGACAA TCCTTTGATC ATAAATTCTC CCCAACTATA AATCATTTTA TGTCTTTATC AT |
Predicted Small Protein
Name | NONHSAT146517_smProtein_3317:3490 |
Length | 58 |
Molecular weight | 6492.7362 |
Aromaticity | 0.105263157895 |
Instability index | 58.8736842105 |
Isoelectric point | 5.97662353516 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0426112386898 |
Amino acid sequence | MEFSLSMFKLLACLLIHICFKMNIFHKIGINFNDAPGMEPQIYPIGDNPLIINSPQL |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHHLHHHHHLLLLLLLLLLLLLEELLLLLLEEELLLLL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooo |