NONHSAT146377

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT146377

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2947 nt

Genomic location

chr17+:18392856..18398254

Exon number

4

Exons

18392856..18394637,18395262..18395303,18395771..18396173,18397535..18398254

Genome context

Sequence
000001 ctcaaggccc tctcgggcca ccatgctttt gcatatgctg tccctggtcc cggaagcacc ctctgccagc ctgccctcag 000080
000081 cacacgccta atcgcccttc catgctctgc caaagtgtcg ctcctctggg agtcctccct gcccagaata ttgttggatg 000160
000161 ctccccccat gcccccacgg agtctgtaca tatctgtgcc atgccagttc acagcacccc attgtaactg tttgcgtgtc 000240
000241 tgtccctgtc actccacccc catctcccta tgcccatgag gccccagagg gctgggactg tgggtcgttc atttgcacag 000320
000321 tgcctggcac tcacttaggg actcgaagaa tggatgaatg TGGAATGTGG TTTTCGCAGC CAGGGAGAAT GGGATACCAG 000400
000401 CCAGGGCAAG AACAGTCTAC TGGGTGGGGC AGGATCCACG ACAAGGAGGT GGGCAGCCCT TCCTCTGGCC ACTCAAGCAG 000480
000481 TGGGGACTGG GAGGAGGGGC GCTTTGTCTA TGTAGCCTTT TTATGGCCCA TGATGGTACA GACAGTGCAC CTGCCTCCTG 000560
000561 CCACGCTGAC TTCAGGACTG GTGGAGCCCC AGGGAACATT CGCAGGGCAG CCAAACTTtg gccctggccc tggcgctggc 000640
000641 cctggccctA GGGATGACAg aaagtgtgct ggatacagtc agacagaatt ggctgccatt ttggatttga tcccttccac 000720
000721 ccgggcaagc ttgggcaagt tgcttaatct ttctgagcct cattgcctca ccAGGGACAC AGGAGCTGAG GCTGCTTCCC 000800
000801 TCTTTGGAAA GCACTGAAGC CCAGGACTCG GCCCACAATA GGCCTTCAAC AAATACCACT TCTCAGCTTA CGGGTGAAAT 000880
000881 ATGGCACCGG AAGTAATGCT CTTGGCTGTG GGAGCTACAG ACAGCAATGA GGTCTCTATC AAACCCAGCC TCCTCTCTCT 000960
000961 CGAGAGGAAC CAGTGGGGAT ACCCTACCCC TCAACCCCAA AGCCTTGTGC ACCTGAGGGT AAAAATCTGG GTGCCACGGG 001040
001041 CTCAGGAAGG CTTGCTTGGG AGCAAGAGGG AGGTGGGTGT GTCTGGGGAG GCATTTCTGA GCACAAGAGC CTCCCTGGAG 001120
001121 TTCTGCCATC GTCTCTCCCC GTTCTGTGGT GCCCGCAATA ACCACCGTTC TGACTCTCCT CACCCCTCCA GCCTCCCAGC 001200
001201 GTGCGGCCTG CCAACCCAGC TCCCATTGTA AGTCTCTTGC TTTCTTTTTG GATCCTCTTG ATTTTGGCTC TTCTTCTGGG 001280
001281 CTAATGGAGG ATGCAGGGCC AGGCATTGGG CCTCTCCCAT CGGGAGTGGG GAGGGCAGAG GCCAGGCCCT TGACCATCTA 001360
001361 CCCGGCCTGG CGAGGTTGGT GGGTGAATGT GGTTGGCTGG CCGTGATGGA ACAACCTGAG TTGCCACTCC ATGGGCAGCC 001440
001441 ACGGAAGACC ATGCCCCACG TTCACTTCTC TCACCTGCAA AGGGAGGCTA GGCTGAGAGA CGTTTCCCCG AGAGGAAAGA 001520
001521 TGGGCCAGAG CCACCAGCGT CCCCATCTGT CTTCTCCAGG GTCCTAACCT TTGCCTCTCC CTCGTCCCCT GGACCCACCC 001600
001601 TCCGTGGGGT CTGTGGGGCC ACTGGGCTGG TTATGCCCCT GGAGGGTGCC TGCCGTGTGG CACCCTCTGG TGGGAGCTGG 001680
001681 GGTGGTCTTT ACTCAGGAGA GCCTGGGTGA GACCTGGTTT CTTTCTTCCA GACCCAGACA GTCATCCACA CGGTGCAGAG 001760
001761 TGCCTCTGGA CAGATGTTCT CTACTCCCGC CATCCCACCT ATGATGTACC CCCACCCTGC CTATCCGATG CCTTTCATCA 001840
001841 CCACCATTCC GGGAGGGCTG TACCCATCCA AGTCCATCAT CCTGTCAGGC ACTGTCCTGC CCAGTGCTCA GAGGTAAGCC 001920
001921 AAAGGCTCCA GTGACCTCTG GGAAGAGAGA GCCCTTCAAG GTCATTCCAG CCATTCCCCT GGCTTTTGGC AGGCTGGGGA 002000
002001 TGATGGGGAG GAAATGGGGC TCAGAACTCA GTGGACAAAG GTCCAGGTAG GCTGCCCACC CCAGGTTCCA CATCAACCTG 002080
002081 TGCTCTGGGA GCCACATCGC CTTCCACATG AACCCCCGTT TTGATGAGAA TGCTGTGGTC CGTAACACCC AGATCAACAA 002160
002161 CTCTTGGGGG TCTGAGGAGC GAAGTCTGCC CCGAAAAATG CCCTTCGTCC GAGGCCAGAG CTTCTCGGTG TGGATCTTGT 002240
002241 GTGAAGCTCA CTGCCTCAAG GTGGCCGTGG ATGGTCAGCA CGTGTTTGAA TACTACCATC GCCTGAGGAA CCTGCCCACC 002320
002321 ATCAACAAAC TGGAAGTGGG TGGCGACATC CAGCTGACCC ACGTGCAGAC ATAGGCGGCT CCCTGGCCCT GGGGCCGGGG 002400
002401 GCTGGGGTGT GGGGCAGTCT GGGTCCTCTC ATCATCCCCA CTTCCCAGGC CCAGCCTTTC CAACCGTGCC TGGGATCTGG 002480
002481 GCTTTAATGC AGAGGCCATG TCCTTATCTG GTCCTGCTTC TGGCTACAGC CACCCTGGAA TCGAGAAGGC AGCTGACTGG 002560
002561 GATTGCCTTC CTCAGCCGCA GCAGCACCTG GGGCGCCAGC TGCTGGAATC CTACAATCCC AGAAGGCGGG CACAGCCAGG 002640
002641 GAGAGGGGAG GAGTGGGCAG TGAAGATGAA GCCCCATGCT CAGTCCCCTC CCATCCCCCA CGCAGCTCCA CCCCAGTCTC 002720
002721 AAGCCACCAG CTGTCTGCTC CTGGTGGGAG ATGGCCTCCT CAGCCCCTCC TCTCTGACCT TTAACCTCAC TCTCACCTTG 002800
002801 CACCCTGCAC CAACCCTTCA CCCCTCCTGG AAAGCAGGCC TGATGGCTTC CCACTGGCCT CCACCAACTG ACCAGAGTGT 002880
002881 TCTCTTCAGG GGACTGGCTC CTTTCCCAGT GTCCTTAAAA TAAAGAAATG AAAATGCTTG TTGGCAC
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Predicted Small Protein

Name NONHSAT146377_smProtein_2123:2305
Length 61
Molecular weight 6591.6698
Aromaticity 0.05
Instability index 75.4316666667
Isoelectric point 9.40362548828
Runs 10
Runs residual 0.0169326241135
Runs probability 0.0407083554143
Amino acid sequence MRMLWSVTPRSTTLGGLRSEVCPEKCPSSEARASRCGSCVKLTASRWPWMVSTCLNTTIA
Secondary structure LEEEEEELLLLLLLLLLLLLLLLLLLLLHHHEELLLLLEEEEEELLLEEEEELLLLLLLL
PRMN -
PiMo -