NONHSAT145930
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145930 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
926 nt |
Genomic location |
chr17+:16342301..16345340 |
Exon number |
5 |
Exons |
16342301..16342374,16342641..16342707,16343499..16343567,16344388..16344444,16344682..16345340 |
Genome context |
|
Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTTGCAAAT TCGTGAAGAA 000160 000161 TCAGCATCAT GTTTGGCAGC TGAGTATTGG AGCCAGGAGC CTGCCATGAG GTTTTGAGAA CAGAGTGCTG TTTTAGAGCT 000240 000241 GGCAGCAGCA TCTCAGCCCA AGAGAAGGTT ATATTCCCAG AGGATGTCAG TCCCAAGGAC CAGTAGCTGC CATCAGTTTG 000320 000321 GATTCTGAAA ACTAACTGGC ATCAACACTG GGTGTAGAAA CATGCTTGCC TTATGTATCA GAGGACATGC TCAGCAGATC 000400 000401 CAAGAGATAT ATTTGGCAAC TTTTTCTAGA AAAGGCACAT TGGGTATCAT TCATTACATT CTTGAGtttt tttgggtttt 000480 000481 tttttttttt tttgagacag tcttgctgta ttgcccaggc tggagtgtgg tggcacaatc acagctcatt gcatcctcaa 000560 000561 tcacccaggc ctaagcaatc ctcccacctt gtagctggga ctacagctca cagcacacct ggctaaaatt ttttttttgt 000640 000641 tgagacggat tctctatgtt gcccaggctg gtctcaggct cctgggctca gatggtcctc ctgcctcagc ttccaaagGC 000720 000721 ACAGGCCAAG TTGTAGCTTT GTCCCTTGCC ATCATGCCCA ACAAGAGGTT CTATACCTTT TAATGAATTG ACTTTCATAA 000800 000801 ATTGGTTATG TTGGTGGGCA AAGTTCTTTA AGCTGGAAAT TGTAAATTCC TCCTGAAATG TTTTTTCATG CAGTTACCAT 000880 000881 GAACTAATAC TACAATAAAG GATGGTCTTG GGTGTCAATT CTTGAA |
Predicted Small Protein
Name | NONHSAT145930_smProtein_386:625 |
Length | 80 |
Molecular weight | 9214.4964 |
Aromaticity | 0.189873417722 |
Instability index | 66.6151898734 |
Isoelectric point | 10.4531860352 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0156091920798 |
Amino acid sequence | MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP RPKQSSHLVAGTTAHSTPG |
Secondary structure | LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL LLLLLLEEEELLEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo ooooooooooooooooooo |