NONHSAT145922
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT145922 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1070 nt |
Genomic location |
chr17+:16342301..16345340 |
Exon number |
6 |
Exons |
16342301..16342374,16342641..16342728,16342895..16343017,16343499..16343567,16344388..16344444,16344682..16345340 |
Genome context |
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Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160 000161 GGTCGCTGAA ACCTCTACAA CTTAGTTGAC CGTAACTGCC AGAGCCCTGC CCTGAATTCC TGTCCTTACT CCCTCTTTAA 000240 000241 GATTGCGTAC CCACTGCAGA GTGCTGAAGA CGGGGTAGCC ACGAGGTTGC AAATTCGTGA AGAATCAGCA TCATGTTTGG 000320 000321 CAGCTGAGTA TTGGAGCCAG GAGCCTGCCA TGAGGTTTTG AGAACAGAGT GCTGTTTTAG AGCTGGCAGC AGCATCTCAG 000400 000401 CCCAAGAGAA GGTTATATTC CCAGAGGATG TCAGTCCCAA GGACCAGTAG CTGCCATCAG TTTGGATTCT GAAAACTAAC 000480 000481 TGGCATCAAC ACTGGGTGTA GAAACATGCT TGCCTTATGT ATCAGAGGAC ATGCTCAGCA GATCCAAGAG ATATATTTGG 000560 000561 CAACTTTTTC TAGAAAAGGC ACATTGGGTA TCATTCATTA CATTCTTGAG tttttttggg tttttttttt tttttttgag 000640 000641 acagtcttgc tgtattgccc aggctggagt gtggtggcac aatcacagct cattgcatcc tcaatcaccc aggcctaagc 000720 000721 aatcctccca ccttgtagct gggactacag ctcacagcac acctggctaa aatttttttt ttgttgagac ggattctcta 000800 000801 tgttgcccag gctggtctca ggctcctggg ctcagatggt cctcctgcct cagcttccaa agGCACAGGC CAAGTTGTAG 000880 000881 CTTTGTCCCT TGCCATCATG CCCAACAAGA GGTTCTATAC CTTTTAATGA ATTGACTTTC ATAAATTGGT TATGTTGGTG 000960 000961 GGCAAAGTTC TTTAAGCTGG AAATTGTAAA TTCCTCCTGA AATGTTTTTT CATGCAGTTA CCATGAACTA ATACTACAAT 001040 001041 AAAGGATGGT CTTGGGTGTC AATTCTTGAA |
Predicted Small Protein
Name | NONHSAT145922_smProtein_530:769 |
Length | 80 |
Molecular weight | 9214.4964 |
Aromaticity | 0.189873417722 |
Instability index | 66.6151898734 |
Isoelectric point | 10.4531860352 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0156091920798 |
Amino acid sequence | MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP RPKQSSHLVAGTTAHSTPG |
Secondary structure | LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL LLLLLLEEEELLEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo ooooooooooooooooooo |