NONHSAT145919

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT145919

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1066 nt

Genomic location

chr17+:16342301..16345340

Exon number

5

Exons

16342301..16342374,16342641..16342728,16342842..16343017,16343499..16343567,16344682..16345340

Genome context

Sequence
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160
000161 GGGAAGTGCC GTCAGAAGCG ATAACTGACG ACGTCTAATG TCTATCTGAC CGCAGTCGCT GAAACCTCTA CAACTTAGTT 000240
000241 GACCGTAACT GCCAGAGCCC TGCCCTGAAT TCCTGTCCTT ACTCCCTCTT TAAGATTGCG TACCCACTGC AGAGTGCTGA 000320
000321 AGACGGGGTA GCCACGAGGT TGCAAATTCG TGAAGAATCA GCATCATGTT TGGCAGCTGA GTATTGGAGC CAGGAGCCTG 000400
000401 CCATGAGGTT ATATTCCCAG AGGATGTCAG TCCCAAGGAC CAGTAGCTGC CATCAGTTTG GATTCTGAAA ACTAACTGGC 000480
000481 ATCAACACTG GGTGTAGAAA CATGCTTGCC TTATGTATCA GAGGACATGC TCAGCAGATC CAAGAGATAT ATTTGGCAAC 000560
000561 TTTTTCTAGA AAAGGCACAT TGGGTATCAT TCATTACATT CTTGAGtttt tttgggtttt tttttttttt tttgagacag 000640
000641 tcttgctgta ttgcccaggc tggagtgtgg tggcacaatc acagctcatt gcatcctcaa tcacccaggc ctaagcaatc 000720
000721 ctcccacctt gtagctggga ctacagctca cagcacacct ggctaaaatt ttttttttgt tgagacggat tctctatgtt 000800
000801 gcccaggctg gtctcaggct cctgggctca gatggtcctc ctgcctcagc ttccaaagGC ACAGGCCAAG TTGTAGCTTT 000880
000881 GTCCCTTGCC ATCATGCCCA ACAAGAGGTT CTATACCTTT TAATGAATTG ACTTTCATAA ATTGGTTATG TTGGTGGGCA 000960
000961 AAGTTCTTTA AGCTGGAAAT TGTAAATTCC TCCTGAAATG TTTTTTCATG CAGTTACCAT GAACTAATAC TACAATAAAG 001040
001041 GATGGTCTTG GGTGTCAATT CTTGAA
[back to top]

Predicted Small Protein

Name NONHSAT145919_smProtein_68:187
Length 40
Molecular weight 4158.5731
Aromaticity 0.0512820512821
Instability index 48.9179487179
Isoelectric point 6.51776123047
Runs 5
Runs residual 0.0405354449472
Runs probability 0.0
Amino acid sequence MEGHICQSLESAKAGTRFPGPQWGCANPRELGSAVRSDN
Secondary structure LLLEEELLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -