NONHSAT145635

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT145635

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1676 nt

Genomic location

chr17+:10633092..10672360

Exon number

5

Exons

10633092..10633193,10656111..10656193,10657546..10657679,10669996..10670173,10671182..10672360

Genome context

Sequence
000001 CTGACCTGCA CCAAGGCCGC CAGCGCGAAG AAGGCGGCCA TGAGTCCGTT GCAGGCCCGC CACAGCGCTG GCGCCATGGC 000080
000081 TCGGAGAACA CGGCGCGGGG CGAAAATATG CTCTCTTAAG AACCAAGTCT GAAGCGAAGG CTGTACTTGA ACTTCGGGCT 000160
000161 GGCTGGACCA CTCAGACCGA TTGAGGCCCC TAAGGTAAAA GCCTTGCTCC AAGTCCCCTT CTGACTTCTA GTCACTTCCG 000240
000241 Tgctgccagc agagggcgtg ggattcttcc tgaggagcct gagtctcagc tttgccaggt ccttgctgtg tgaccttggG 000320
000321 CACCTGTGCT CCCTTGACAA AGAGGAATAA AACCTCTTCA GACTACTCTC CTATCGATTC TCTCCTGGAA CATATGACCA 000400
000401 CCATCAATTA TAggcaagaa catgaacacg ggagtcccaa agacttgggt tcaaatgtca gccccttcac tcgctggctg 000480
000481 taggtgtgag gccctggCTC CTGTGGGGCT ATTGCAGAGG AGAAACTTCT GGAACAGAGA GCTCCTTGTC CAGGGATGCT 000560
000561 GCATCTGGGT GAGCTGCTCC TTGGATATGG TGCAAGTGTG GCCAGGGTGT GGTGTGGAAG GAGCAGAAGT CTTCAGGACt 000640
000641 gaatctggat ggaccactgt gacagctgta tacccaggtg gtaccagttt ccctctctgc agaagtcccc ccaacagcac 000720
000721 cattctcagt gccatacctg gcctcatcag ggctctgatg caagacactg tatatgcaga atatattatt tcatcctcac 000800
000801 aacagttctg tatcttccac attttatagg ctaaggaaat aggctcaggg tagtcaagta gctttcccaa aggcacacag 000880
000881 cagcagaagg ggatttgaac ccaatttggg ctatctccaa accccacact ttCGGAATAA CTGTGGAGGT ATCAGGATGC 000960
000961 ATCTATTATA TGTCAGGGGA CTGCTAGAGA CTCAAAGCCC TCCCCTCCTG TCCATAGGAA AGGAGAGACC CCTTAGTACT 001040
001041 GATTGCTTTG GTGGGGCTCT GGCACTCCGC AGTGATCACC TATAGGAAAA CATGGAGTAT CAGAATATTG GTCTCTCAGG 001120
001121 AACCTGGCTT TGTGGGGTGG TTTGAGGCAG TAGTTGCCCC TTCATATGTG CACCCAGGCC CCTGCCAGAC AGGTAATCAC 001200
001201 ATTGCCTCCT CCTtgtggca gattatattt cccagaaagt gcctgcaaca atacttccag tcccatatgt gcttctagag 001280
001281 ccggtcactc tctcagttta aaggtggagt ctatttccct tccccttaag actgcctcag tggttagact atggcaagaa 001360
001361 agatatcatg tgacttccaa gacaaatcct aaaaggcaac acagcttcca cctggctctt tctattttga gccacttacc 001440
001441 tatggaacac cagccaccat gttggaagga agcccaggtg acatggagaa gcatctgtga gtgctctggc aggcacgcca 001520
001521 gcttgaatct cagccatcag ccagcatcaa ccaccagatg cgtgagagag agccttcaca tgacttcagg cctcagcctg 001600
001601 caagctgtcc cagcttatgc tgagtgagca cagacaacct atccctgctg agccctgtcc agtctgcaga tttctg
[back to top]

Predicted Small Protein

Name NONHSAT145635_smProtein_956:1084
Length 43
Molecular weight 4606.3294
Aromaticity 0.047619047619
Instability index 63.6214285714
Isoelectric point 6.69708251953
Runs 6
Runs residual 0.0333031946956
Runs probability 0.0178119295766
Amino acid sequence MHLLYVRGLLETQSPPLLSIGKERPLSTDCFGGALALRSDHL
Secondary structure LEEEEHHHHHHLLLLLLLLLLLLLLLLLLLLLLLEEEELLLL
PRMN -
PiMo -