NONHSAT143557
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143557 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3500 nt |
Genomic location |
chr16-:72314108..72392089 |
Exon number |
9 |
Exons |
72314108..72314585,72317327..72317533,72325069..72325312,72355299..72355336,72368022..72368507,72371225..72371852,72380224..72380971,72391412..72391517,72391523..72392089 |
Genome context |
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Sequence |
000001 TCCCAGCTGG TGAATAAAAT CTATCACGTT GACAAAACAG CGTGAGTGAA AATCTTTTAA ACATGCATCA GCTGCAGGAG 000080
000081 CTGAGTGTTG AGAAATACAA GATTAAGATG ATGCTGGAGA GAACTGAGGG GCACTCACGT TCACCCCTCT AGGAAAACCC 000160 000161 TGCCTGTGCT CTACTGAGTC ATACACCATT AGGGTGATAA GGCAAGCTCA GCTGCTAAAG ACATGTCTTT CCTATAATGT 000240 000241 ATATATCAAA AAAACATGGC AGAGACGTTA TGGCTCAGCT CCCTGAATCA AGTTATCTCT AAAATGAAGA TTAGATATTA 000320 000321 GTTTTATTAC TCTATTATTA GAGTTATAAC AAATCTAAGT GCTAAATTCC TTTGAATATA TTGTCCTTCA TACCAAGCTG 000400 000401 GCAATACCAT AAAGATAACA ACTGAGGTAG AATATTTAAC AAATATTTAT TGATCACCTA CTATGTGCGA AACTACAAAG 000480 000481 ATAAATCAGA CTTGGTCTTG GACTTGCAGG AGCAAAACTT CATGTTCCGT GAGGATAATA GGCATACATA AAAACACCCA 000560 000561 AGCTGAACAT GAAGAAGAAT GGAGGAGTAG AATTCTGTCA TGGTGTGTGT AGGGAGGAGG GTGAGGAAGA ATGAATAAAG 000640 000641 ATGACAGTTG GGAAAAGATA GTTTATATAA CAAGGGATAG TAGGCAGGTT GTGATTGGAA TCTTAATAAC CTGTCAAAAC 000720 000721 AGAGCATTTA AATCCTGTTC ATGTTATTTT ATATCCTTCC CATGGAACAC AGATAGCCAA GAAGACAAAT AAGAGAGGAC 000800 000801 CCTTGGTATT TTTTCCTTGT TTGTATGATC CTGAGGGTTT TGATGAACTG GCTTTTGCAA GTTACATTGT CGTTGTTCAA 000880 000881 GCCAGCTTCA GCTGATTGAT TTGGCAAGGA TCCAAGGCAT CGAAAATCAA AACAAAACAA AACGAAAAAG AAAATAAAAA 000960 000961 CTCAGATCAG ATCAGAATAC ATCATAACAA TGTAATCATT CAGCATCTCA TCTGGTTACT TATAATAAGT TGTGCAGTGA 001040 001041 TGAAATGGAA ATAATTTACT CTGGCCACTC TGTGTTACTG TTAAATCATT TATGTGCTGT GAAAAGAACT GCAAACTGTT 001120 001121 GAGACTCAAA GATCCCCTAA CTGCATTCTC CCAAGGAATT CTCCACCACG ATCCCCAGTT CTATTTCATA TTTTAAACAT 001200 001201 TTTCTTAGAG TGTGAGCTTT ATTATCCACA TTCAAATTCA GCAAGGCTTA CTCGTCCAGA TAGATCACCA TCAAGAAATA 001280 001281 CAGTAATGTG AAATTGAGCT ACTTCTGACA TTTTTATGGT TTGTGATATA CGATACAATG TGATGTATGA AGCTCTTTGT 001360 001361 AATAATTTTT AATTTTGAAA TAGCTGATTC TTTGGGGATC ATTTAATACA TAATTCCATA GGAAAGGAGT CTCCTGGTTT 001440 001441 GTCTTTTTGT GACTCCTCCC TGCTCTTGCT CCACTTCCCT GTTCTCTGGG CTGCCTTTAA AAGAAAATCT ACAAAGCAAA 001520 001521 TGTGAAAAGA TTTAGATAGA AATGAAAATT AAAGTTCTAT ATATTAAAAT TCATGCACTG TAACCACATG GTACTGAAGC 001600 001601 ATAAATGTAT ACCTTTAAAT ATATTTGTGA AGCATAAAAA AGATTGTAAA AAAGTAACTT AAGTGTTTGA CTCATGAAGC 001680 001681 TAGAACAGAA TAAATAAAAA AAAAAGTAGA AGGAAAGAAA TAATGGAGAA AAAAGCATAA ACTAATAAAA TTAAAAACAA 001760 001761 AGAAATAATA CAGAGGATCA ACAAGTCAAA AACCAGTCTT TGAAAAGAGT AAAAAAAAAA AAAAAGCATG TAGCCAGACA 001840 001841 AATTAAGAAC AGATATAAAA AACACAGATT AATAAAAATT AGGATTAAAA AATAGAACAG AGGTATAAAT CTGTAGAGAA 001920 001921 TTTTTCAATC ACTTATGAAT ATTATGAATA ATTGTATGCC AATATATTCA AAAACATTTA AAATGGACTT TTTAATTTTT 002000 002001 TTGAGACAGC GTCTCACTCG TTGCCCAGGC TGGAGCACAA TGGCGCATTA ATTTGATGTA CCAATTGGTA ATCCATATGA 002080 002081 AAATAAAATT AGTTTTCTAA CTCATATAAC CAAAAAAAAA AAAAAAATCC ACAGGTTAAA GACCCAGATA TGAGGGGTGG 002160 002161 AGTAAGCAAA AGCATTAAAC TCCATAAAGA AAATATACGA GAGTATGGTA AGAAGGAGCA TATTGACCAA AATGCCAAAA 002240 002241 GCACAAACCA GAAAAGAAAA TATTAATAAA CTTGTCTACA TTAAAACTTT TAAAATTTCC TATTCTACAA AAGACACCAC 002320 002321 AAACAAAATT CAAAGGTAAG AGATAGGTGA GGCAAGATAT CTATAACATA TACTATTGAT GTATAGTTAC AATATACACA 002400 002401 AAGAATTTGT AGCCACAATA TATCCAAGAT GCATTCAACT CTTTTTTTTT TTAATTATCT ACATGTGCAC ATTGTGCAGG 002480 002481 TTAGATACAT ATGTATACAT GTGTCATGCT GGTGCACTGC ATTCAACTCT TATTTCTGGG ATAAAGGGTT GTGAAGCTAA 002560 002561 TTGTCAATCC AATGTAATTG GTTAAGATAA GATCATACTG GATGTGGATG GGTCCTAGAT CTGACTGCTG ATATCCTTAT 002640 002641 AAGAAGAAGA AAGGACACGC GGAGACTACA GTGATGTTGC CACAAGCCAA GAAATGCCAA GAATTTCGGG AGCCACCAGA 002720 002721 AGATGGAAGA GGCAGGGAAA AATCCTCCCC TAAAGCCTTC AGAGAGAGCA TAGCTCTGCC AACACCTTGA TTCTGGACAT 002800 002801 CTAGCCTCTT AAACTTATTA CATCTGGGAG TACAACTTGA AGGGCCCCAC ACTCTTGTTT CTCAGCACCT CATAAATCTA 002880 002881 AGCCCACGTG AAGTGAACAG AGCATCCCTT CTTCAAGAGA ATGGAAAAAG AAAGGATGCT GAGGAGGAAC TGTTGGGGGC 002960 002961 AGAGCCCTTG AAGCCAGCTG GCAAGACTGA GACCACTGAT CAATGCTTTG CCCACTGAAA GGAAAGAAGC TGAAGCGTAG 003040 003041 CAGGAGCTTA ACTGATGAGA TCCATTTTCT CTTCCATCAA GCATCTTCTT GTGTATTGTC TTAATCCAAA TCCTTGACAG 003120 003121 AAATGCTGAA GAGGACCTCT GTAGGCTAGG TTGATCCTGA ATTCTCAAAT AGCACTGACT GGTACGCAGT TTAACCAAGT 003200 003201 CAGTTTCACC TAAAAGTGTG ATTATCCAAC CCACATGTTG CCATTCTGTT AAAAAGGATG GTACAAAAGA CAGTCACAGT 003280 003281 CACCTGGCTT ACTGACATAA ATATTAATAT TAATCCAATA AGTAAAAAGC ACATGAGAAT TGGCTGCCAC AGAAAGAAAA 003360 003361 ATTTCGACCT GTATCTACCA AGAAACTATC TTACCAACTA AAGAAGCCAA ATCTGTCTCT CTTTCAAAAC CCTCATGGGG 003440 003441 CCATGTTTTA TTATAATGGT TTGTCACAGG TCCTAACCCA TACTGTATTT GATTATATAC |
Predicted Small Protein
Name | NONHSAT143557_smProtein_2378:2584 |
Length | 69 |
Molecular weight | 7794.1668 |
Aromaticity | 0.147058823529 |
Instability index | 44.9279411765 |
Isoelectric point | 7.61016845703 |
Runs | 10 |
Runs residual | 0.00655802861685 |
Runs probability | 0.0405493729023 |
Amino acid sequence | MYSYNIHKEFVATIYPRCIQLFFFLIIYMCTLCRLDTYVYMCHAGALHSTLISGIKGCEA NCQSNVIG |
Secondary structure | LLLLLHHHHHHHHHLHHHHHHHHHHHHHHHHHHLLLLEEEHHHLLHHHHHHHHLLLLLLL LLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLL LLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTii iiiiiiii |