NONHSAT143238

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT143238

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

3473 nt

Genomic location

chr16+:68298423..68335722

Exon number

3

Exons

68298423..68298479,68307721..68307807,68332394..68335722

Genome context

Sequence
000001 GCTGCCGCGG CGGCGGCGGC GCGACCGAGC ATCCTGGCGG CGCCGGGCCA CTGGGAGgca gtggcgtgat cttggctcac 000080
000081 tgcaacctcc gactccctgg ttcaagcgat tctcctgcct cagcctcctg agtggggatt acagGCTTTG TTTACACTTG 000160
000161 GAGCCACCTT GGTGTGGGTC ACCGGGACAG TGTACTCCTC TCCTGCCAGC CTCCCCTTCC CCGAGGTGTG GTGGCTGCAG 000240
000241 TCTCAGGAAG AGCTTGGTAC TTGTGGGGAC TTCTGTTTTC TCCCTGTGGA GATCAGTGAA GACTGGGAGG AAAGCTGCTT 000320
000321 CAACCTGAGT CCGGCTCTTC AGCAGGCTGC ACAAGTGGAA GCAACTAATT CTGGTGCTCA GGCTGGGCTC TCCACCCAAG 000400
000401 TTAGGCCTGC TCTGGCCTAA TGGATCTTAC TGTATGAGCA GGACGGCTGC ATTGGATTGT ACAACTGTTT TGTGATGCCC 000480
000481 CCAGACACTG TCATCCTGGG CCGAGAAGAA CCTGCTAGCT TGACATACCC CATGGGCTTA TCCTTAGGTT TTGGAATTGG 000560
000561 TCAACAGTGA GGCAGTCTCC CTTCCTGACC ATTCTTCTCC ACCCAGTCAC AGATAAGGGA ATAACCTTGG CCATATATTT 000640
000641 GCTCAATAAA GATTGAAGGA AGCATGGTCA TAGTTGCCCT GGGTTCAGAG CATAATGCAT ATGTGAAGCA TGGGGTGACA 000720
000721 TTCCTACTGT CATGGGTTTG GGATTTGTAA CGGCAAATTC CTGCCCGACG ACAGGGTGTC TTATGCAAAG GCTGACTTGC 000800
000801 CTGAACGCTA AGAACATGAC TTCTGTCTGA GCTAAGCTGG CACCCATCCC AGGGCTCCTC TGGAGCTAAT CCTTTAAGCA 000880
000881 AAATGTGCTT GCCTTTTAAA GATCCCTGAC CCCAGCTTTA GCTTTCTCCA CCAGATAACC AGCTAATCCC AGGAATTTGC 000960
000961 TGCCCCCCAC CAGTGGCTTC TAGGGAAAGC AAGGACCTCA CATGCCAGGT GCCCTAGTAC TTGCTTAGTG AGCCATGTCA 001040
001041 TCCTCCTTTC ATTTTTGGAT GGTGACAGCA TTTTTCCCCT CTGTGCTGGA TACAGACTTC TCCCAGGATC CTCTCTTTGG 001120
001121 GAGCGAAGCC AGAGGATCCC TACAGCACTC AAGCTTCATG GTGGAATTAA TTTCTGCCAG CTCTTTGTTG TCTGTCTCCT 001200
001201 TAAATCCTTT TCCTGGTGTG CTTATTATCC CTTTTGCAGT GAGTACAGTT TATTAAGTTG TCAGCCCTTT AATATTGGGG 001280
001281 AAACTTAATG AGTATAAATA GCAGGGAGCA CATTGTAACA GCACAGTGTT TTGTTTTTTT CACCCGGTTG CTGTATGAGA 001360
001361 ATGGCTTTCA ATCCTTTGTT TCTATGCCTA CAGACAGAAA GCAAGATGTC TAATATTAGA CATACAAGTT GCTGCCTGTT 001440
001441 ATAACGGTGA ATTATACCTT TGTGCATGCC TAGGATGTTT GTTGTTTTAA TTAGCTGCAA TATATACGGC CTGTGTACAC 001520
001521 AGAATTTAAT CACTTCGGCA GGTTGAACAA CTCCATGTAG ATAAGAGCAA GTGTAGGCAA AGGTTTAGAA AATGGACATA 001600
001601 AAGTCAAAGA ATGATGGCAG GTAGGATGAA GGAGAGATAC TTAGGAAATC CTAAAAGAGG CGGCAAGAAG GTACCTCCCT 001680
001681 GTGTAACTCA CCTTCCCCCA TGACAGTGAG TAAGAGACAC TCACAGGCTA TGAGGGTACA CCCCTAGCTG AATGTTCTGT 001760
001761 GTTGTTTCCT TAGACctgtg gtgtccgctg caacagctac tagccacgtg tagctaatta cattaaaatg aaataaaatt 001840
001841 aaaagctcag tttctcagtt gcgctaatca catttcaagt gctcagcagc cacccgtgtc tactactaca cagtgcagac 001920
001921 acagaacata tcatcactgc agatagttct actggacaat gttACGCTAG AATAAACACC AAGGCAGTCA GTTAAGGCAG 002000
002001 CTATGGTTTG GAAAGGCATA CGGACAGAGT CTGCTTAGAA GAGATACAAG TTGTTAATAA AATTGATCCT GTTGATAGTA 002080
002081 GTTTGTTTTT GTGGTGGGTG CTGTGAAGAG TAAACATTAC TCAGTGGAAA GCTAAGTTCA GAAGGTACTT TGTTTTTCCT 002160
002161 CCCTTGCCTT AAGTCCTTGG TATTTATAAT CAATGCTGAA CCTTCTATTT CACTACCGCT CCCTGTTTTA GATATTCAGA 002240
002241 TTTAAAAGGT TTTCAAAGAA TTACTTTCTT CCATGTTCAA AGCTAGATTT TACTAAACAC ATGTATCACA TTCATATATA 002320
002321 TTGTTTCTTG GCCCCACTGC CAAAGGAAGT CAGTCAGTAA TTTCACAACC GTTATCAGAG TTTGGAAGCA GAAATAGCTG 002400
002401 TTAACTAAAA TCTCCCACTG CTCAGACTAC TTTCTGCCCT AATGGCCATT ACTATCCAGT CTGTATTGCT ACAAGGGACC 002480
002481 CACTGGTACC CCTTTTAGAT TCTATCAAAA GGAACAGGGT TTTCCTAGAG GCAGGCAGCC TGGTGGTATG GCACAGCAGA 002560
002561 AGCTTACTGC TAATGAAATG GGAACCTCCC CCTCCCTTGT GGTTTCAGCA CAGAACCTGA ATGCCAGGAA AAATTCCTGG 002640
002641 GCCAAGAAGC TAAAGCTAAA GAAACCTTCC TTTTTTCAAC GTTTTTTTTT CTTTCAAACT GTAGGGTCAC TTTTGATTGA 002720
002721 GGCAAAGGGG TCCTACTGTA AGTGGAAAAG ACTCACTCCC CTAACATAAG TTTTCACTGT GGTGGGATGG TGCCGCCCGA 002800
002801 TATGCTTGAT ATGCTTTTCC TTCCACATGT TAAGCTAGGA AACCTAACAG GATGTCAGCA GGGCAGTTAA CTCTGGACTC 002880
002881 AGAGCCCTCA AGGGCATGTG GCAGAACCTC ATGGACATCA CAAGACCATC AGTCTGAATC CAGGTCGTGG GGGCTGTCAT 002960
002961 AGCCGAACTC CTTCTGCACA TCCAGAGGGT ACTTGCTCCA CATCCGCTGT CTGCTGCTGC CTCTTTCCTC CTCACTCAGG 003040
003041 CTGTTGTAGT CAGCAGAGCC TAGAATGACA TCCCGGGAGT GGATTCTAAA TGTGATTTTC CTAGGCTACT GCAGGAGCCC 003120
003121 CTTCTCTTCT CAGAAAGGTC TGTTTTTGTT CCCGATTGTA ATGCAAAATC CTTGCTCAAT AAATAAAAAA GAATATAGAA 003200
003201 TTCTTTTTTT TTTAAAGAAG GAATCACTTT CCTATCATCT AAACCAAGTT CCTTCACACT GGAGTATTTT GTCACTTCTC 003280
003281 CCCTCCGTGG AGTATTTTGT CACTTCTCCC CTCCGTATAG GATTTTTTGT TGTTGTAAGA GTTGTAGTCA TATTGTAAAT 003360
003361 ATTTTTGTAC CTTTCTCCTT TTAACGTGTT ATTGACAAAC CTCCCCAAAA GAATATGCAA TTGTTTGATT CATTTCTCTG 003440
003441 TTATCAGACA CCAATAAATT CTTTTTGTTG GGC
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Predicted Small Protein

Name NONHSAT143238_smProtein_1034:1255
Length 74
Molecular weight 7979.0294
Aromaticity 0.150684931507
Instability index 46.5917808219
Isoelectric point 4.41802978516
Runs 10
Runs residual 0.00715863897481
Runs probability 0.0571718777601
Amino acid sequence MSSSFHFWMVTAFFPSVLDTDFSQDPLFGSEARGSLQHSSFMVELISASSLLSVSLNPFP
GVLIIPFAVSTVY
Secondary structure LLLLEEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHEEELLLLEEEELLLLL
LEEEEEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH
HHHHHHHHHHLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTT
TTTTTTTTTTooo