NONHSAT142492
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142492 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1916 nt |
Genomic location |
chr16-:52039404..52041319 |
Exon number |
1 |
Exons |
52039404..52041319 |
Genome context |
|
Sequence |
000001 CATAAGGCTT GGCAATAGTG GCGGCCAAAT AATACTTGCT TAGTTCTCCC CTCCCTCTCT ATTCCATTGG TCTATTATTG 000080
000081 TTGTTGTTGT TAAAAATTTT CCCCCCCTCC CCTCCGCCAC TCCCATCTAA TTTGAAGCTC CTCAAGAATG GAAGCTGTCT 000160 000161 TCTTGTTCAT CAGATGGTTA TCTAAATGGA CAGGAAGTTT ATTCTGCTTA AGGAGAAATT CTACTTTCCT GCAGTCTGTG 000240 000241 GGCCCTCGCT CACCACCCAG GGGTGGTTTC TGGGTGTGGC AGGCCTAGCT AAGGGTTTCC CATCAGCCTA TCCTGTGCAG 000320 000321 GGAATCACCC ATCACCTGGG CTGTGCAGAG GCTAAAGTCC CTTCCTGATC AATCCATCAC TGCCCAGAGC CTGCCTCACT 000400 000401 CCTGACCCCA GCAGGCTGTT AAAAGGGGGC CCATGTCCCT TTGGTCTCTA AGTGTCCACT TTGCTATTAG CAGAGAACAG 000480 000481 ACATTCAGAG GAGAGGGGCT CCCCACCACC CCCAGGTGGT GCCAAGTCTG CCCTAGGATG CTAGGAGAAG TCTAGAGCTA 000560 000561 AGCCTCTGTC CTCTCTAACC CATTCCTGCC ATTACACAGC CCTAAAATCA TTAGGGTCGG AGAAGGGAAC CCCTGCCCTG 000640 000641 GCCTTGCCTT CAGAAGCCCC ATTGCTTTGA AACAACATGC TAGAAAAATT TTAAATACCT TCATCTGTGC CTGGGATGAG 000720 000721 TCTGGTGGGG TGTTTGAGCC AAGTGGGAAT TCCCATGGAC CCGGTCCAGG TTCCTCCTGT TCAGGGCACT TTCTGAATGT 000800 000801 CTAATTGCAA ATATTCACAT GTGGGGTCAA TCTGCCACCT AGCTTCCAGG AAGGTGGCCA AGAAGTTGAC TGCTCCCACT 000880 000881 GTAGGTATAA CTGTATGAGG TTCTGCAGCC AGAATGGTGC TGACACCTTG ATTTGGGGTA ATTCTCACAG CAGACATAGG 000960 000961 ACAGTGTAGC TCTGGCTACA GAGAGTCCCC TGCAGACCCT GGGCTTAGCG ACACATGTAA GCCATGCAAG TATTCTCTAC 001040 001041 CATTCATGTA GAGAATCAGT TCCTAAGAAT GGTGGGCCCC CAACTCCGAC ACCTGGGTTG GCTACCCCAT CCCCTCCATA 001120 001121 GGTTCCACAT CAGGTGTCAG GAGCGGTCAC ACATGTCTTC TTCACGGGCT CCCTAGACCA CGGCTCTGTA TCACCACAGG 001200 001201 GACTCACATG TCCTCTCCTG CCTCAGGAGA TGTGATAGTC TTGCCCTCCC AGGTCAGTCC TATGGCACAT GAGGCAAGGG 001280 001281 ATGAACATGG CTTGCACTAA AGGGACATCT CATTTGTCTT CCTCTGGCCA TAGAAACTCA CCTATGCTCC CTGTGGTAGT 001360 001361 TACATGGAAG GTAGAGGCCA ATCAACACTA AAAGCAATCA CATTCTATAA ATGCAGCAAT TGCAATCTAC AGAGTTCAAA 001440 001441 AGAAGACACG GTGGGAAGAT GGGTTGTTCT ACTTTTTAAC CCATTCAATT TGGAACAGTA AATTTAACAC ACAGAGAACA 001520 001521 TTAATCATCA TAGTCTTGGT CTGCATACAT TGGGTAAGAC TTGGATTTGT GGTCATTATT AACAAAGCTC AGTGGCAACC 001600 001601 TCTTAGAGTC ATTGGAAGGT GATGCAGCTG TGTAAGTAAT GCTGTAATCA GCATTAATAG TTAGAGTTAG GAGACAGCAG 001680 001681 CTGGGTGAAG ATCTATATTG TTTCAAAGCA AACAGGTTAA GAAGGAGCCA TGGCAGTGTA AGGAATAATT GTTGCTATTT 001760 001761 TTTTTTCTTG CAGCAGAAAT GTAAAATTAA CAAGGAATTG TTCACCTGAT GAAAAGGAAC ATGGAGAGAT GGTTCTTGAA 001840 001841 TCTGAATAGG AGGAGATCGT GCCTGGACAC ACTAGGAAGA ATCTTCTGCA TTGATTTGAT TAAAAAACAA CTATGT |
Predicted Small Protein
Name | NONHSAT142492_smProtein_185:367 |
Length | 61 |
Molecular weight | 6482.5529 |
Aromaticity | 0.133333333333 |
Instability index | 40.0968333333 |
Isoelectric point | 9.13946533203 |
Runs | 11 |
Runs residual | 0.0335992907801 |
Runs probability | 0.046723193782 |
Amino acid sequence | MDRKFILLKEKFYFPAVCGPSLTTQGWFLGVAGLAKGFPSAYPVQGITHHLGCAEAKVPS |
Secondary structure | LLEEEEEEELLEEELLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLLEEELLLLEEEELLL |
PRMN | - |
PiMo | - |