NONHSAT141399

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT141399

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4359 nt

Genomic location

chr16+:25268857..25273215

Exon number

1

Exons

25268857..25273215

Genome context

Sequence
000001 CCGAGTGGGT GGGGCCGGAT GTGCAGGCCC CGCCCGGCGC CAGGTTCCGG GCTCGGGTCA CCGCAGCACG TCCAGGCCGC 000080
000081 CGCGGGTGCC GCTGGGGCCG CCGGATTCCG AGAGCGGCGC CGGGCTCTTT CGGGCCCACG ACGGCCCCGA CCGTCCTGAG 000160
000161 GAAACCGCTG CCGCCGAGGA AAGGCCGCAA AAACTGTTCC GCCCGGAAGG GAGAAGAGCT GCGGGGCGAA GCCAGGGCTC 000240
000241 GCAGGGGGCA GCGGCAGGCT GCTCGCGTTC GGCCTCGTCC ACTCGGCCCG CGGAGAGCGC GGGGGGCGCT GGGAACCGCA 000320
000321 GTCACGCATG CGCCGCCTGC CACCGAgcgc cgcggggccc gcgcgaggcg tcctggcggg cgaggggctg ggggaggggg 000400
000401 ggggggccgT GCGGTGGACT CTCGCGAGAG CGCGCGGCGC GGTGACTCGT CGCTGAGGGA CTTTAAGATT GTAGAGGGGC 000480
000481 GCGGAGGGTC CTCCCCGGGG CGGAGGGACA CAGAGGGATT CTAGGGAACC TGCCGTCGCG AGTCCCGCTT CAGGCGGAGA 000560
000561 ATCTAGGCGG CGGCGGGGCC TCCCTGAGGC GGAGGAGTCG GCACCGGGGC CTGGCTGCCG GGGAAGGAGA GCACGGGAGC 000640
000641 GGGGACTCCT GTGTCTGGCG GAGGGACACG GCGTTCCGGT GGAGGGATCT GTTCCTTGTA CCTGGTCCAG GGTTGCGGTC 000720
000721 GGGGATGGAG CGGTTACCCC GACCCTGCGG GACCTTCTTC CTCTGGCGGA GGTGCACGGC GCGGCGTGGT GTTTTTCTGG 000800
000801 CGGAAGTATC TGTGCGTGGC CCCAGGCCCT TCCCGGCGCG GTCTCATCTG GGGCCACTTG TTGGCCCTCG CGTTGGGGAG 000880
000881 GTTCATGTGG TGCATCCTGA TGAGAAGGGG GGTCACAGGG GTCTCGGGGC CAGGGTTCAG CCAGCCAGGC CCCAGCTTGC 000960
000961 TCTCTTCTGG TGCTGCCCCT GTCCCTGAAT TCATAGACCC GGCTTTCCCT CTCttgagca cctactatgt gccaggctgc 001040
001041 gctttgcgca tgtagcagag gcaacagtgT CACCTGGGAA GCTGGTTtcc cccaaaggaa ctcttgtctg tccgttgttg 001120
001121 cagagccagc gcatgagacc aagtgtgagt atcaggcagt gcagccttca ttcagtggcc atggaattgg agaagtggga 001200
001201 gggtagctcg caaatcaagc tctcagctct tggaaactga gaagttacag gtaataggga gtgttgacga aaagtaaaac 001280
001281 cgtgcaaaat atttgaagag atttattgtg agccaaatac gagtaaccac agcctgtgat acagccctct cgaggccctg 001360
001361 agaacatgtg cccaaggtgg tcggggtgca gcttggtttt atgttttagg ttggcatgag acatcagtca aatacattaa 001440
001441 atacattggt ttggtccagg aaggcgggac aacgcaaagg ggtgggggtg ggggcttcca ggctataggt aaatttaaat 001520
001521 attttctagt tgacaattgg ttgagtttgt ctgaagacct gggattgata gaaaggaagt gttcaggtta agataaaaga 001600
001601 tagtggagac taaggttctt ttgaagtctt atggtggctg ctcttagaga taatagatga caaatgtttc ctattcagat 001680
001681 cttcaaaagg tgttagactt ttagttaatc cgtttaggat tgggagggcc tggaagaaaa acatctagct atgttaatag 001760
001761 atgttcttta cagatgcaca ttttacccca caaaggatag cttttggggg aaaatgctgt cctttatgga agaaattgca 001840
001841 aaatagggca aggaaacatg ttttggggta aaatattttg actttctttt tgtcacgtaa tgttatgcca gagtcagaat 001920
001921 ggaaagtaag tcatcatata taggattaaa taaaacccat ctgatgagaa tttatggttt gtaggtcatg actccccaga 002000
002001 tcccttagat aggaatttgg gcaggattaa aaaaatcaag agtttaggct ggtcgtggtg gctcacgcct ataatcccag 002080
002081 cattttggga ggccaaggca ggtggatcgc ttgaggtcag aagtttaaga ccagcctggc caacatggcg aaaccccgtc 002160
002161 tctactaaaa atacaaaaat tagctgggca tggtggcaca cgcctgtgat tctagctgat tgggaggctg aggcatgaga 002240
002241 ctcaacttga acccgggagg cggaggttgc aatgagctga gattgtgcca ctgcactcca gcttggttga caaagtgaga 002320
002321 ctctgtgtca aaaacaaaac aaaacagaaa aaaaaaacaa aagaatcaga gcttagtcgt caggtgtcct taatgaaggg 002400
002401 gctgggcatt aagagcaagg cgaggaggca gaaggaaagc ttgagcccag gaattggaga ccagcttggg caacatggta 002480
002481 agaccctgtc tctaaaaaaa ataaaaatta agaacaagag gaggaatatt catgtttttt cttgggaagg gaggtagatt 002560
002561 ttcctggaat caaggagctg cccctttttt tgtccttttt ttggtctctt cgggtcatca cggtgattgt caactgtcat 002640
002641 ggcaaccagt gggaatgtca tttagtactg aagttggatt agaatgaagc tagaggttct tcagaggtcg agtaagctaa 002720
002721 gaaggaacct atgaccacag acaacctgtt ttctaaaaat aagcagagtt aaatctgagt aggaatttag ctatgtcatg 002800
002801 gaggcattgc attgggtaac aaAAGCCAGG TAGGCGTCCA GCTAAGTCCC CTAGGCCCTG CAACGGGTAA CAGCAGTACT 002880
002881 GACTCTATGT TAGAGAAAAG CTTGCTTGCT TGAGTATAAT TATTGTTTTG CCTGAGTTTG TAAACTATTC ACTAAAAACA 002960
002961 GCCACAGAAA AAAACAGGAC CTTCTTCAAC AGATAAAACA CACAGACCCG CAGCTTTGGG AACAGGCTGA TGGCCCCTGC 003040
003041 ACAGTCTAGT CACAAGGCAT TGACCAAGAA AGTAATGACT AACTGCCCAT CTGAGACTGC GCATGATTCA CAAGAATGtt 003120
003121 tctttgtttt gttttttgag acagtcttgg tctgtctccc aggctggagt gcagtgatgt tggttcgctg tagcctctgc 003200
003201 ctcctgagta gctgggacta caggcgtgtg ccaccgcacc tggctaattt ttgtattttt agtagagatg atgtttgact 003280
003281 atgttggcca ggatggtctc gaactcctga cctcaagtga tccacctgcc tcggcctccc aaattgctgg ggttacaagt 003360
003361 atgagccacc gctcctggcc CACAAGAATG TTTTGATCAT TATTTCTCCT AATTTTCCTT AAAATCCCTG GATCTAGAGG 003440
003441 CACAACTGAG AAaggtggtc tttgaatgct agtgcactgc cttttgcagg ttgctggttt ctcgaataaa gctaactttg 003520
003521 ctttcaccaa agcttgtctt ttgagttttt ggctttcagg cgacgagtgg cctggacacc agttCGGCTA CATGTATGTC 003600
003601 AGTGGGCAAA ACAAAAATCC TTATTCTGGG AGGTAGATAG CTTATTAGAA AACACAACCT AATCACTTGT TTCCCAAATG 003680
003681 TTAAAAATTG AGCCAATTTT AGCCCCAGAA GCTTAGGGTA CCATGTACAT AACAGGCATT ACCTGAGGGT GGGGCAGAGA 003760
003761 GAATCAGTGG GGTACCTCGT ATATGCCAGG GGTTGTATCA GCATCCTTAC ACAGCTCATT TTTCTTttta aataatactt 003840
003841 attgaggacc tatttaatgc cagatatggt ggtaggtagg gagcaaaagc aggattcccc tcccattatt gagttttcag 003920
003921 tctggtggga gaggcaggaa ttaaataagt aatccacaaa ctcaagtaca attctaaggg agatgggtgc caccaagaag 004000
004001 agacatggtg ctgagaacct atgtctgtca gagggatttg atctatttgg gaggtctgga aaggtttttt tgaagaagca 004080
004081 gtgctagggg tgagatccaa aggagaagag ctaattaggC AAAGCCtagt cctcacaaaa atcctataaa ccagatatga 004160
004161 ttaccttcat tttagagttt agggcattga gacttgagca aggtgatgtc actgcccaag gttacatcag attaaatggc 004240
004241 aacccaggat tcagattcaa atAAGAGTAG GGTTCTTTAT ATTCTCCTTG GGCTATTTGG TGGTTTTAGG AGAGGCAAGT 004320
004321 ATCACAAACA GCTTGGGGAC ATGAGGGAGc aggaatcac
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Predicted Small Protein

Name NONHSAT141399_smProtein_3029:3277
Length 83
Molecular weight 9283.7593
Aromaticity 0.109756097561
Instability index 62.5573170732
Isoelectric point 6.79217529297
Runs 11
Runs residual 0.00175535846268
Runs probability 0.062637503814
Amino acid sequence MAPAQSSHKALTKKVMTNCPSETAHDSQECFFVLFFETVLVCLPGWSAVMLVRCSLCLLS
SWDYRRVPPHLANFCIFSRDDV
Secondary structure LLLLLLLHHHHHHHHHLLLLLLLLLLLLEEEEEEEEEEEEEELLLLLEEEEEELLEEEEL
LLLLLLLLLLLLLEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLL
LLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiii
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