NONHSAT141032
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141032 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2071 nt |
Genomic location |
chr16-:21875623..21877693 |
Exon number |
1 |
Exons |
21875623..21877693 |
Genome context |
|
Sequence |
000001 AAAGCCCGTG CAGTCATATC ACGCGTAAAC ATTTGCTTTA TGCTAAAAAT ATGGTGGACC TGGCATTACA GCTATTACAA 000080
000081 ATCTCCTAAG ATGTCTCGGG TAGTGTATTA GTTACTTTTC ATACTGCTAT GAAGAAATAC TGGAAACTGG GTAATTTATA 000160 000161 AAGAAAAAGA GGTTTAATGT ACTCACAGTT CCACAAGGCT GGAGAGGCCT CAGAATCATG GTGGAAGGCA AAGAAGGAGC 000240 000241 AAAAAGGTAT GTCTTCCATG GCAGCAGGCA AGAGAGCACG TGCAGGGAAA CTGCCCTTTA TAAAACCATC AGATTTAGTG 000320 000321 AGATGTATTC ACTATCACGA GAACAGTATG GGAAAAACCT GCCCCCATGA TTCGATTACC TCCTACCGGG TCCCTCCCAC 000400 000401 GACACATGGG GATTATGGGA ACTACAATTC AAGATGAAAT TTGGGTGGGG ACGCAGCCAA ACCATATCGG GTAGCAACAA 000480 000481 CCTAGGGTCA GTTTTGCAGG TGGTAAAGCC ATTTACCAAG ATAGTTGTGG GTAAAGAAGG GCAGATTTAT TAGAGAAATT 000560 000561 GTGAAAATAT GTTGCAGTGG GCAGCTCAGC AGAGAAGGGG CTACCTGCAA AGAGGCAAGG GCTGGAGGAA AGTTTTATAG 000640 000641 GGTCCTGCTG AAGGGTGCTA CGTGTGGAAT GAGGTCATTG TGCCCGCAGG TTGTTTGTGA TTAGCTGTCT CTAACAATTG 000720 000721 TTCATACAAT AATTGTTCAT TATTGTTCTC AACTTGGGGC TCTCCCCAAC CTGGGGACCC TTCCTTATTG TTGCTTACTT 000800 000801 ATCAGGTCTC CACATAAAGG TGTGGAAACT TCATTCATTC ATATCTTCAA CACAAATTGT AGGTAGCCTG TTTTTTAAAA 000880 000881 CATTTATTCA ACAAATATTT AGTCCAAGCC ACTATTACTT ACTACCTTCT CTACTATTGT ATGGACTTTT AACTATCTCT 000960 000961 GACACTATTC ACTATTCTTC CACATTCTCT ATTATTTATA CCTATGGTAA AATTTGCCAG TTTGACCATA CAACTAATAC 001040 001041 TCACAGGGAA TATATAGAGT CTAGAAGAAA ATATACAGGT CCTTAAAGGC TGCCCTGCCA ACAAAACCAT AACGCAGGAA 001120 001121 CAAACATCAC AACTATGCCA AATAATCAAT CCTACAATGT CCAAAATTTT ACTTTAAAAC TGGAATTACC AGACTTCCTT 001200 001201 TCTGCATTAA CCAGTTTAAC TAGACAGTAA CGAAATATTC CTACTTTATG CTGTGATAGT TTGTTTGTTT GTTTGTTTGT 001280 001281 TTATTTATTT ATTTATTTAT TTAAGACAGA GTTTCGCTCT TGTTGCCCAG GCTGGAGTGC AGTGGCACGA TCTCAGCTCA 001360 001361 CCACAACCTC CGCCTCCCAG GTTCAAGCGA TTCTCCTGCC TCAGCCTCCC GAGTAGCTGG GATTACAGGC ATGTACCACC 001440 001441 ACGCCCGGGT AATTTTGTAT TTTTAGTAGA GACGGGGGGT TTCTCCATGT TGGTCAGGCT GGTCTAGAAC TCCAGACCTC 001520 001521 AGGTGATACC CCTGCCTCAG CCTCCCAATG TGCTGGGATT ACAGCTGTGA AGCCACCGCG CCCGGCTGCT GTGATAGTTG 001600 001601 AGATGTAAAC CAAAAATAAA ATTCTAAGCC ACCCAATCCG ACTGAATGGA CCCTTCCTGT TGAGCAAGGA CATTCCAAAG 001680 001681 TAAACTGAAA AGACCAGCTT AGGCCATGAT GGGAAGGGGA GGTGTCAACA TGCCTCATTC TACCTTCCTC CCTCTGGAAT 001760 001761 CCAGACACAA CTGACCAGCA TTAACATTAA AACAGAGATC TTAAGCTGGG CACAGTGGCT CATGCCTGTA ATCCCAGCAC 001840 001841 TTTGGGAGGC CAAGGTGGGA TCACCTGAGG TCAGAAGTTC AAGACCAGCC TGGCCAGTAT GGTGAAGCCA TGTCTCTACT 001920 001921 AAAAATACAA AATTAGCCGG ACATTGTGGT GCACGTCTGT CATCCCAGCA AGGCAGGCGA ATCACTTGAA CCCAGGAAGC 002000 002001 AGAGGTTGCA GTGAGCCAGG ATCATGCCAT TGCACTCCAG CCTGGTCAAC AGAGCGAGAC TCCGCCTCAT T |
Predicted Small Protein
Name | NONHSAT141032_smProtein_176:436 |
Length | 87 |
Molecular weight | 9733.8976 |
Aromaticity | 0.104651162791 |
Instability index | 49.1186046512 |
Isoelectric point | 9.65313720703 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0476554986359 |
Amino acid sequence | MYSQFHKAGEASESWWKAKKEQKGMSSMAAGKRARAGKLPFIKPSDLVRCIHYHENSMGK TCPHDSITSYRVPPTTHGDYGNYNSR |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHLLLHHHHHHHHHHLLLLLLLLLLLEEEEEEEELLLLLL LLLLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |