NONHSAT140949

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT140949

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

3846 nt

Genomic location

chr16-:20807666..20811511

Exon number

1

Exons

20807666..20811511

Genome context

Sequence
000001 CACATAAATG CATTTCTTAA AGTATTTAAA AACAACACAC AAAAAATAAG CACATTCTAA ATCTAATAGA ACTAAAAATT 000080
000081 ATGAAAAGTG TTTAATACAT AGTCTTTAAA ATAGTAATCT TCTTTTAAAT ATATCTTTTT TTATTGGTTA GCTTTTCTAT 000160
000161 AGGAGAAAAC CAAAAGGACT AAGTGGTGCC TTGCAGGAAG TAGGAATAGA ATTCTCAGGA CGAGAACATT CTGGTTAGTA 000240
000241 TACATTAAAA ATTATGTAAG CCATTTGACT TTTAAAAAAT ACTTCATATG AATTTCATTT TTTGGTAATG TCATTAGTAA 000320
000321 GGGATATCTT CAGCCTAAAA AAAAAAAACT CCTAATCTAA ACAATTCACA TTGTTTCTAA GACTTTCAAA TTACCACTTT 000400
000401 CATAAACTAT TGTAAGATAC ACTGCCATCT AGTGGCTTTC TAGTTGCTAA GAAGAATGAA AAGAATGAGC CAAATCAAAT 000480
000481 GGAGATTAAA CAAGTGCTCA AATAATAGAA TGGACTAGTG AAAAAACTGA ACAAGACTAT TAGATTATTC ACAAATCCTG 000560
000561 GTTCCTGCAG AACGCTGGCC ACATTTTGGG GAACTGTCTA ATACATTTTC ATATCCTCCT CTATAAATGT GGACGAGCTT 000640
000641 GTCTTTCACT GGTAATGCTG CCATAGCCTT CCACTTCCAA GACCAGTTTA TCATGATTAA AATTAGTAGA TGGTCATAAA 000720
000721 ACTAAAACTG TGTTCCAATT TCTACACAAG TGGTGTTTTT CTTTTTAAGT TATTTCTTTA GTACTAAGGA AATAGTACTA 000800
000801 GTACCACTAA ATTCAGTGTT TGATATCTGT ATCCTCAGGG TTGGACGATT CTCGGAATAC TGCCCTTCTT GCTTGGAAAA 000880
000881 TGATCAGAGA TGGTTGTGTA ATGAAAATTA CAAGGTCGTT GAACAAGGTT AGTAGTGTCT TGCCTTTTTA TTCTGTCATC 000960
000961 TCAAACTTCA TAAACAGTCA TACGTTCTTT GAAACGTAGA TTTAATGTGT GCAGTCATTT ATAAATCAAT GACATTTCTC 001040
001041 TTTTTTGTCA TAAAACTGTA TACTGAAGAA ATTAACGAAT GCACAGTTTC TAAAGCTGTT GCATTTGTCT GTGGAATCAT 001120
001121 AGGTTCCCAC TAAGAAGAAT TTCAGCATTC TGGCCAGAAA TTTGAATACA ATTCAAGTTG AAGAAATGTC TGCCTGTAAC 001200
001201 ATTAGCATCC AGGGTCCCAG CATATATAAT AAGGAGCCTA AAAATATAAT AAATCCTCAT GAAAAAGTTC AAATGAAGTC 001280
001281 AATTTGTGCA AATTCTCCTA TAAAGGCACA ACAGGATCAA TTACAAGTAA AAAACAATAT AAAAGCAAGT CTTCACAATG 001360
001361 TCAAAAGTTC CTTACCTCTT TTTAATACTA AGTCCTCTAC TTCTGTGGGG CAGTTGCAGT CTCCTACCTT GAATTCACCT 001440
001441 ATCTATATGC AAAAGCAAGG AAAAAATGAA CATCTTGCAT TTAATACCAA ATCTAAGGCT TCAACAGTTG GTTCAGAATT 001520
001521 GGTACTTGTT TCTACCACCG TTCCAACTGT TCATCATGTT TCTGATTTGG AAATGAGCTC TACTCTGGAC TGTTTACCTG 001600
001601 TGTTGGCTGA TTGGGAGGAT GTGGTTTTAC TGCCAGCATC TCAGCCTGAG GAAAACGTAG ACTGTACAGT TCCCATTAGT 001680
001681 GACTCAGACT TAGAGATTTC ATTTAATTCT GGAGAAAGAT TAATGGTTTT GAAAGAATTG GAAATGTCAA GTCATGAAAA 001760
001761 CTTTGGAGAC ATAGAGGAAA CTCCTCAAAA ATCTGAGACT TCTAAGTCTA TTGTGTACAA GAGTCCTCAC ACTACTATTT 001840
001841 ATAATGTAAA AGAAGCCAAA GATCCAGGTT CAGATATTTC TGCCTTTAAG TTACCTGAAC ACAAATCAAG TACCTTCAAC 001920
001921 AGAGTTAATG CCAATATGTC TCATCCTTTA GTTTTGGGGA AACATCCTCT TCTTTCAGGT GGTACCAAAA GGAATCCATG 002000
002001 CAGTCCCCAA GCTTTCCCAC CAGCAAAAAA ACAACCCTTC ACTATTCATG AAGAAAAGCC TACATCATCT GATTGCTCCC 002080
002081 CAGTAAGAAG TTCTTCCTGG AGGCGTCTCC CATCTATATT AACTTCTACA GTTAACCTAC AAGAGCCATG GAAGAGTGGG 002160
002161 AAAATGACAC CTCCATTATG CAAGTGTGGT CGGAGATCTA AGAGACTTGT TGTTTCTAAT AATGGACCGA ACCATGGAAA 002240
002241 AGTCTTCTAT TGTTGCCCTA TCGGGAAATA CCAAGAAAAC AGAAAATGTT GTGGTTATTT CAAATGGGAA CAAACACTTC 002320
002321 AAAAGGAAAG AGCCAACAGC ATGGTTCCAT CTCATTCCAC AGGGGGACTC ACTTTTAGTT CTCCAGAAAC AAGCCATATT 002400
002401 TGTGACAGAA ATTTAAGTAT TTCCACCAAA AATTCTTTGA GACTCAGGCC TTCAATGAGG AATTGATAAC CTTTCATGTA 002480
002481 TGAATCCTAA TTGTTCCTTG AATTTCCAAA CATGAGTATT CTGATAACAT CTTACACtat tttattttta ttttatatat 002560
002561 taatGTTTAC TGCATTTACC ATACTTTCTT CAGGAACCAC AAGTGTAATC TTTTGTAAAC AGTATTTATT AGATTACATA 002640
002641 TAATAAGCAA CAATAGTATA TGATCCTTCT TTTATAGTTA GACCTTGAAA CAAGTCTAAA CTATTTTTAA ATTATTTGCA 002720
002721 AAAAATGTGA CTAATAAAAA TCCCTAGTCT ATTTTCAGGT AGATTCTTGT ACTTTGAGAT TATCATAATC TTCTAACTGA 002800
002801 TATTTTATAT TTTTCTAAAA ACTTTTATAA GTTCTTTAGT TTTATTTCAG GCTTGAACAT TGGTTCTGAT TTGTATATCA 002880
002881 ACATATCAGA AGAATTAGTC AACTAAAGTT TGAAAACCTA TGTAGCAGAG ATCTGGTTCA GAAACTGCTT CTATACTATA 002960
002961 CATTTAAAAA TTAATCAGCA ATTGATGGTA TTATTTTTAT ATTAAGAAAT GATAGGAACA TTGACACTAA TGTGGAGGAA 003040
003041 TTTGCCAAAT ATTTTATTTC AAAATTTAGC CTCTGATATC ATAACCACAA GATATTTTAA ATCAACAGTT TCTAAGCATA 003120
003121 CTACCACAGT TTTTATGACC TCTCCATCAT CTTGTGGTTT CTAGAGATTG ACAGATACTA TGTTTGTTTT ATAGATATGG 003200
003201 TAATTAATGA AACAACTTTA AATTGTCTTC CATTCTTTCT TCCTCAGTTC ATTTCTTTTT GTCTTCCCAC TGATAGTCTT 003280
003281 TGGCAGCTCT TGAATAAATT CTACCTGTTG GCATCAAGGG GAAGAAAATT AGCCTGGAAA TTTTTATCTT TACATAAAGC 003360
003361 CAATTATATA GCAGTTTGAT TATGAATTCT AGGTGGAAGA ATTAGAATAG TCTTTGGAAT GGGTTTTGGG TAACAGCCAA 003440
003441 AATAGGGAAA AGGGTATTGT TAGGAAAGTT GTCTTGATAT TAAGTATTTA CTGTGAGTCC AGTAAGCCAA AGGACCAAAC 003520
003521 AAAATAGGTT CAGGGTTTCA TTTTAATCTC AAAGATTCTG ATTCTTACCC ATATGTCATC AGTTCAGTTT GGGACATGTG 003600
003601 GTGCAGCATG TGTGAAGAAA ATATTCATTA AAATGTAAAA ATAAACACTT GAAATTGTCC ACAACACTGA GCAAATATTC 003680
003681 GTTATAATTA GGATGCCTAC CTTTCTGGGA TATTTGTAAG GTGCTGTAGT TTTTTTAACA TGCTCCTGAA TCTCCTTTAT 003760
003761 TAGTTGTTCT TGATCATGTG ACTTGTAATC AGGATTTAGA ACGACAAAAG CCTTTACTAC CTAAAATAAA TATTTGAAAC 003840
003841 ACCAGG
[back to top]

Predicted Small Protein

Name NONHSAT140949_smProtein_3008:3163
Length 52
Molecular weight 5772.6944
Aromaticity 0.117647058824
Instability index 42.8196078431
Isoelectric point 9.78216552734
Runs 10
Runs residual 0.0418365365948
Runs probability 0.0481010422187
Amino acid sequence MIGTLTLMWRNLPNILFQNLASDIITTRYFKSTVSKHTTTVFMTSPSSCGF
Secondary structure LEEEEEEHHHHLHHHHHHHHHHLLEEEEEELLLLLLLLEEEEEELLLLLLL
PRMN -
PiMo -