NONHSAT140925

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT140925

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1690 nt

Genomic location

chr16-:20451077..20458302

Exon number

5

Exons

20451077..20452277,20452816..20452908,20453548..20453710,20457315..20457433,20458189..20458302

Genome context

Sequence
000001 ctcacatgta atctaaacaa gaactctaca agagaggtat ccagagccac attttataga taaggaaatt gaggctcaga 000080
000081 gaggactaga aatttggcta agctcctgca gctgAGTTGG GGGCTGCATC TGACAAGTGG CCGTGGTTTC AAGTCTCTGG 000160
000161 AGTCCCATTT TTTTCTCTTC CATGGAGTTT GTTTGCTGCA GTTTGAGGAG CCGAGGCATA TGATAAATAC CAGgtgtcct 000240
000241 tagaagaaga ggagattggg ccccagacac acatgcacag aagaaagacc acgtgaagac agagggagaa gacggcgatc 000320
000321 tacaaaccaa ggaaacatcc tcagaatgaa accaaccttg ccaacccctg atcctagacc tccagcctcc acaacggtct 000400
000401 ttggactcag atggaattat accacggggt ttcctgggtc tccagcatgc agatggcaga ttgtggaact tctcagcctc 000480
000481 caaaatcgat tttaatgctg tgtgatcatc ttagtgcacc acacattttc tgcattttga tttttttctt ttgtggtgac 000560
000561 tcccgaagat agaatttctg agctaaagga tattttattt tatgttcctg catacttttg ccaaatggtt acatacaaag 000640
000641 gatgaagcct ttacattccc actggcagaa aatgagtacc cACAAGTGCC CCAAGTCTAT GGTAACCTGT CCTATGGAGG 000720
000721 GAAATCTGAA AGCTCTTAGT GAGACCAGTG GGCAGATGCT GAGCCTGCCC CCAGACAGAG GGAGAAGTCG AACCACCAAG 000800
000801 CATTTGCTAG GCGGCGCAGC ATCTATGTGA TCAGGGCCAA TGATATTCTT TTGCTCTTTC CAGCATTGCC CAGTGATCCT 000880
000881 GGGGATGCCG TTTGGAAGCT GCACACCTTT GACATCTTTA GGGTCGAAGA GATGATGCTC CCCATGGGGA CTGACCAGTG 000960
000961 ATCCATTAGT TTCTTGTGGA GTCTTCGGAG GTCTACGGGG CCTTCCTGGG GTGCACCTCA TTTCCCCCAC TCCTGACTTC 001040
001041 GCAATTTACT CCTTTGGATC TTTCCAGAAA CCGTCTTTGG CAGTTCTGAA ACAAAGGCCA CCTAGTGACC AAACACAAAA 001120
001121 CAAAAAACAC TTGGAAATCA TCATTTCTCA AAAAGACTTT TGTTTTGAAA GAGACAATAC TGTCTGCCTG TCCTTGGAAA 001200
001201 GCGTCCCTGA TTCAGGGTTT CCCCCTAAAT GGCCAGAAGC AAAACAGCTG GAGCCTGGAG CACAGGATCA TTTTGACAGC 001280
001281 ATTTGAGCAC TACCTCTTGT ATCTGATTTG TGGTAGGGAT CAGGCTGTTC TTAGAGTAGG AACAAAATGT GCTTTGGGGA 001360
001361 GAATCCAAGT GAAGAAATAC AGAAAAAAGC TGAAGCAGCA GCCAGGGTTA CAAGTTTCTc catatcccca gtgcctggca 001440
001441 cagggcctgg ctctgagtgg gagcccagGC AGAGCGTGCC CATCTGATTC CCAGATCACT GTGCCCTGGA AACCCTGATA 001520
001521 TTTACCTTCC TGGGGTATTT GTATGGAGCA GTCACCCTTT TCACATGCTC CTGGAGTTCC CGCGTTAGTG CCTCTGGGTC 001600
001601 ATGAGAGGAG TAGGCTGGAG TAAGGACTAT AAATGCCTTT ACCACCTGCA GGAAAACAAA ATACCCAGAA AAGATCAGGC 001680
001681 CTCGTATAAC
[back to top]

Predicted Small Protein

Name NONHSAT140925_smProtein_641:829
Length 63
Molecular weight 6804.9498
Aromaticity 0.0161290322581
Instability index 41.5435483871
Isoelectric point 10.0394897461
Runs 11
Runs residual 0.0237788018433
Runs probability 0.0487225193108
Amino acid sequence MKPLHSHWQKMSTHKCPKSMVTCPMEGNLKALSETSGQMLSLPPDRGRSRTTKHLLGGAA
SM
Secondary structure LLLLLLHHHLLLLLLLLLLLEELLLLLLHHHHHHLLLLEEELLLLLLLLLLHHHHHLLLL
LL
PRMN -
PiMo -