NONHSAT140637

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT140637

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2722 nt

Genomic location

chr16+:13002793..13005504

Exon number

1

Exons

13002793..13005504

Genome context

Sequence
000001 TAAAACATGC TTCAGAAGAA CTGGCACCCC TTGGAAAGAA ATAGCAACAA ATAATGATAA ATGCACCTCC TCCTCTTGCC 000080
000081 TTTTGCCTTC CAGTTTCTCT CCTGCCTCTC ATCTTTCTAT GCATTTGTGG TTATCCTAAG GCTTTGACCA GCTTTCCGGG 000160
000161 CTGGAGAAGT CCATGTGTGC ATGCATCTAC TGTTGGCCAC AGAAAAGTCT TAATTTATTT TTCTTTGCAG GGTATGTTGA 000240
000241 CTTCTCTTTG GGCACTGAGT CCTTGCATTT TAAAAATCAA CTTCATTGAA GTATAATTTA CACAATAAAA TGCACACATT 000320
000321 GTAAGTGTGT AGTTTGATGA GCTTGGACAA ATGTCTATAC CTGTGTAATC ATTACTCTAG AAAGCTCACT CATGCCCATT 000400
000401 GCCCTTGCAT TTTTGAAAAA TAATTGATGC TTCTTGTGCA AGAAGAAGTG CTCAGCAACT CTATTCAAGT GTTTAAAAGT 000480
000481 CAACACATAG ATTGGACATT GGGATACCTG GAGGCTTTGA AGCAAGATAC CGGGACTCTG AGTTCTGTTT GGAAATATTG 000560
000561 GTGTCATATA TTTGTCATTG TAATTGGAAA GAAAAGAGAT GCACCATTTT CTTCTTGTTC TTTGGATAAG CTAAGCTCAT 000640
000641 TCCCATCTTG GAGCTGTTGC ACTGGCCCTT GTGTGGCTGG TCCCTCCTCA TCACCAGGGT CCCAGCTCCA ATGTCATCTT 000720
000721 CTCTGAGAAG CCGTCCCTGA CCAGGCTTAG TTGCTTCCCA CCCCAGCCTG ACACACTCCA GCCCATCACC CAGTCAGTGT 000800
000801 TATTTGCTTC ATTTTTACAT TATGGTCTAA AATTAACTTG CTAGTTTACT GGTTTACTAG TTTATTATCT GTCTCCTTCC 000880
000881 ATTATCCCTC TCCTTCCCTC CTTCCCTTCC CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT CGAGACACAG 000960
000961 TCGTACTCTG TCACCCCGGC TGGAGTGCAG TGGTGTGATC TTGCCTCACT ACAACCCCTG CCTCCTGGGT TTTAGCGATT 001040
001041 CTTCTGCCTC AGCCTCCCGA GTAGCTGGGA CTACAGGCAC CCACCACGAT GCCAGGCTAA TTTTTGTATT TTTATTGGAG 001120
001121 ACAGGGTTTC ACCATGTTGG CCAGGCTGGT CTCGAACTCT TGACCTCAAG TGATCCACCT GTCTCGGCCT CCCAAAGTGC 001200
001201 TGGGATTACA GGCATGAGCC ACTGCACCTG GCCCTTTTAT TATTCATAGT AAGACACACA GGGACCACAA TTGTCTCTTC 001280
001281 TACTCAGTAG TTGGATTCTG AGTGCCTAGT TCAGTATTTG GCAAGTAAGA GTTCTACATT TGATATCCTG GTTTACCTGA 001360
001361 CAACAAAGTA TCTCCAAATT CATTCATTCA TTCTTTCATT CATTCGATAG GTATTTACTG AACATCTAAC TTAAGCCCAA 001440
001441 CACTATGCTG AGAGATATGA GATAACCATG AATAGTACAA AAGCAATCCC TGCCCTTGCA GAGCAAACAG CCAAATATCA 001520
001521 GGAGACAGGT AACACACAAG GAAATGTACA AGAAAGTTGA GCCAGCACTT TTATAAGTGC TGGTTCTAGT ACTAGCTTTC 001600
001601 ATAAGAAAGT ACTGGTTCTA GTACTAGCTT TCAGTACTCT CTTGTGAAAT TTTCAATATT CAGTCATTTC AACCTCAAAA 001680
001681 ATGGCAACAT AATTATGTTT CAACATAATT GTTGTTTTAA ACAAACAATT TTGTTTCAAC ATAATTCTCC TGAACTGGGT 001760
001761 GGAAGGCTAT CAAGAAAAAG CTTAGCTTCT TCTTCAGGTA ACTGCAAGAG ACAGGGTTCT CTAGAGAAAC AGAACAAATA 001840
001841 TACAAAGAGA TTCATTATAA GGAATTGGAA GTCCAAAATC TCCAGAGCCT CTGTACTTGT ACAAGTCTGA AGGCCGACAG 001920
001921 GCAGGAGAAT TCTCTCTTTT TGGGGCAAAG GTCAGTGTTT TGTTCTATCC AGGCTTTCAG ATGATTGGTT GAGGCTCACT 002000
002001 CACATTAGAA GGGCAATCTG TCTTACTGCC ATTAGAATGC AACCTGTTTT ACTTAGCTTA CTGATTTCAA TGTTAATCTA 002080
002081 TTTCAAGAGC ACCCTCACAG AAACACCCAG AATAATGTTT GATGAAATAT CTGGGCACCC TGTGACCCAG TCAAGTTGAC 002160
002161 ACATGACACT AACCATCACA GTACGCTTAG GGTCTTGTCA CTCGGAGTGT GGCCTGTGAA CCAGCAGCAT TTTTATCTTC 002240
002241 TGGGAGCTTG GGCACGATCT CAGGCCCCAC CTCCTGCTTA TTGATTCAGA ATCTGCATTT TAACAAGATC CCCAGGTGAT 002320
002321 CTGGATGCAC CGTAACATCT GAGAAGCACT CAAACTATGT GCCGCAAACA AACGCCAAAT TCTTAGGCAT TTGTGTGGCT 002400
002401 TGGAGCACAT AGTTGGTTCT TTCTACTGTC TAATTCATTA CATTTTTTCA GCACATTCCT GTCTATAAAA TGTTTTTTTG 002480
002481 TATGCACCCC AATATATGCA CATTTATAAG CATATGCATG AACCCACGAA CAATGATTAG GTACATTATG AAGCATACGT 002560
002561 AAGGACAGAA ATTTCAAACC AAGCTTGAGG GTGAAATAAA TATTATTTGA AAACCTGTTG CTAATTGTGA TGACTTCATA 002640
002641 CTATCATTAG TTACTATCTC AATGCATAAT GTACAGTGAC GGGTGAAGTT TATCATTAAT AAAAAAAATC TGGATTTTAA 002720
002721 CC
[back to top]

Predicted Small Protein

Name NONHSAT140637_smProtein_53:295
Length 81
Molecular weight 8816.6636
Aromaticity 0.1125
Instability index 51.74125
Isoelectric point 9.01422119141
Runs 15
Runs residual 0.0486842105263
Runs probability 0.0431784725902
Amino acid sequence MINAPPPLAFCLPVSLLPLIFLCICGYPKALTSFPGWRSPCVHASTVGHRKVLIYFSLQG
MLTSLWALSPCILKINFIEV
Secondary structure LLLLLLLLLEELLLLLLHHHHHEELLLLLLLLLLLLLLLLLEELLLLLLLEEEEEEHHHH
HHHHHHHHLLLEEEELEEEL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH
HHHHHHHHHHHHHHHLLLLL
PiMo oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTT
TTTTTTTTTTTTTTTooooo