NONHSAT140514
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140514 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3582 nt |
Genomic location |
chr16-:10638037..10674489 |
Exon number |
2 |
Exons |
10638037..10641534,10674406..10674489 |
Genome context |
|
Sequence |
000001 AGAGCTTCAA AACAGCCCGG CGGCCTCGCC TCGCACCCCC AGCCAGTCCG TCGATCCAGC TGCCAGCGCA GCCGCCAGCG 000080
000081 CCGGCACATC CCGCTCTGGG CTTTAAACGT GACCCCTCGC CTCGACTCGC CCTGCCCTGT GAAAATGTTG GTGCTTCTTG 000160 000161 CTTTCATCAT CGCCTTCCAC ATCACCTCTG CAGCCTTGCT GTTCATTGCC ACCGTCGACA ATGTAAGTTT CCTTTCCTGC 000240 000241 CACTCACGCA GAAACCTGGG TCCTGCAGTC AATAGAAGTG GGTtgtattg gtctgttctc atgctgctga taaaggcata 000320 000321 ccagagacta ggtaatttat aaggaaaatg aggtctaatg gactcacaat tccacatgtc tgggaggcct ctgcagaagg 000400 000401 caaaggagga gcaaagccac atcttacatg gtggcaggca agagagcgtg tgcaggggaa ctgcccttta taaaaccgtc 000480 000481 agatctcgtg agacttattc actaccacaa gaacagtatg ggataaactt gctcccatga ttcagttacc tcccaccggg 000560 000561 tccctcccac gacatgtggg aattatggga atacaatacg agatttgggt ggggacacag ccgaaccata tcaCAGGTTG 000640 000641 AGAACCCTGC CAAAGTTCTC AATGTTGAAC CTGCCAAGGT TCAACCACGA TTCGGGGTTG TCCTCCCTGC GAAGGCACAC 000720 000721 ACATCTTCTG ACCCAAGGGC TGAGGACTCT TGGCCTAAAT GTGAAGGTTC AGGCCGTCCC ATGTTCAGGT TTTGGTGGCA 000800 000801 GGTCCTGGCA GGCAGGGACG TTTGTCCTCC CATCTGTGAT TCTTTCATAG AGCCTGGCTC TAGGAAGCCC TTTGAGGATG 000880 000881 TTGTGTGACT TCAGCTTTCC TCTAGATcag agttctcaac cttgccacta ttgtcatttt gggctggata atcctttgtt 000960 000961 gtaggggcct ccctgtgcat tgtaggaagt tcagcaacgt gtctggcctt atctgctaga tgcagtagct cccccacccc 001040 001041 tggttatgac aatccaaaat atcttcagac attgttaaat gtcccatgga gaacaaaatc accctctgtt gaggaccgct 001120 001121 gCCCTAGATC TTCCAGGTGA CCCATCCCAG GTGACCTCTG CCCCCAACCC CTGACACCTC CTTATCAACC AGGGTCCCTT 001200 001201 GTTGCTAGCC CACCCGGCCA TGTCCTCCCC AGCAGAGCTC ATGCATGGAA CTTTCCAGAC TCTACCTATG CCCCTATGAA 001280 001281 AAATTTAATG TTTCCCTTTA GTATCCAGCT TGCAGCCATA TGGCAGGAAT GTATTGGATA AATAACCTCT TGGCATAGAT 001360 001361 TAATATCCCT CCAAACAGGG AGTGACATCA GGGAAGCTTC TTAACAGCCT ATACACTGTT CCAAAGACCT GGCTTCCATC 001440 001441 CTGCTCATTT TAGACTGCAG AGATAATTAA AGGGCAGAAA CATTGCTCAG AAAGCCAAAA AGTACACCAT ACGAGTGGCC 001520 001521 ACCAACTCTG CCTACATATA CGGCTCCCGT TGATGGATCA TCATGACAAT AGTAACATAA ACTATAATGC CTGTCACTTA 001600 001601 GCGATcactg tggccctttt atgcatgtca tctcatgtga tccccacccc agctgtacca ggtagggcac cgacatctcc 001680 001681 ttgcaccggg ttacaggtga aggaactgcg cctcagggcc attcgggcac ttggcagagt ttacagtgca gtaagcagca 001760 001761 gagccaggat ttgagccatt ccagaggctc ctggtcctag agcctgtCAG GGGAGATGAG CACAATAATC GCATTTGGGT 001840 001841 TCTGGAGCTT CTTGCTGAGC TGCTGTGAGT GGCCTGGGCA GGGACCACAT TGCTGCTATG GATTATAGca gtggtcccca 001920 001921 acgtttttgg caccaggaac cggtttcatg gaagacaatt tttctacaga ctggggaggg ggcattgcag ggggatggtt 002000 002001 tcagaatgat tcaagtgcat tacatttatt gtgcacttta ttattattac attttaatat ataatgaaat aattatataa 002080 002081 ctcgtcataa tgtggaatca gtgggagccc tgagcttgtt gttctggact agacggtccc atctgggggt gatgggagac 002160 002161 agtgacagat catcaggcat tagagtctca taaggagcgt gcagcctaga tccctggcat gcacagttca caaggttgac 002240 002241 actcctataa gaatctaatg cccctggtga cctgacagga ggcagagctc aggcagtaat gtgagtgatg gggagcagct 002320 002321 gtaaatacag atgaagctgc cttcactggc tgctcacctc ctgctgcgtg gcctggttcc taacaggcta cagacaggta 002400 002401 ccagtccatg gcccatgggt tggggagtcc tAGATTATAG TATTTGGACC CACCATTCCA GGAGCTCACT GTGAAATAAA 002480 002481 TGGGACCGAA TGTTCTTTTA GAATCTCCTT TTTCTATTTC TTCCCATCTA GTCCTTTGGG ATCCTGAAAA GGTCCCAGAC 002560 002561 TTAGTGAAAA GGATAGACAG ACATTAGGGG CAGGAAAACC ATCAGCCTTA GTGAATCGTA TCCAGCACCC CCAGGGTATA 002640 002641 TTATCATGGC ACATACTAAG AAGATGCAGA TGGACTTTTT GTCCATCGGT GAGTCTGAGG GTATTCATTA TGTATTTGGA 002720 002721 ATTGTGCTTG GCAACTGGAA AGTAGAAGGA AGGCCATCTT GGGCAGTGGG GGAAGGGCAG CAGCCACCAA AGCACACAGG 002800 002801 GAAATGAATG CTTTTGGCTG AAGACAGGAG AATCTTGTCT GGTCATCCCA TCCATTGCAA TGtttgtttg tttgtttgtg 002880 002881 acagggtctc tctctgtcac ccaggctgga gtgtagtgtt gcgatcatgg ctcactgcag cctctactgc ccaggctcaa 002960 002961 gcgatcctcc cacctcagac tcctgagtag ctgggactac agtcacacac caccatgcct gactaatttt ttgtattttt 003040 003041 ttgtagagat gggttgcccc ggctggtctc aaactcctgg gctcaagcaa tcctcccacc tcggcctccc aaagtgctga 003120 003121 aattataggc atgagccact gtgcccACCC CTGACTGCTA TTACTTCCAG CAACTCAGCC TCATCTTTTC TCCCATACTC 003200 003201 TCTGAGGGCC TGGACCACCT CTTATCCTTT GGGAGAAagt agcagggcat cacctggagc cggttagaaa tgcagaatcc 003280 003281 tggccaggcg tggtggctca cgcctgtaat cccagcactt tgggaggcca aggcaggtgg atcacctgag gtcagaagtt 003360 003361 tgagactagt ctgaccaaca tggcgaaacc ctgtctctac taaaaataca aaaatgagcc aggtgtgctg gtgcatgcct 003440 003441 ctaaatccca gctactcgtg agactgaggc aggagaattg cttgaaccca gtatgggagg gttgcagtga gccaagatca 003520 003521 tgcatcgcac tccagcctgg gcaacaagag tgaaactctg tctcaaaaaa aacaaaaaaa gg |
Predicted Small Protein
Name | NONHSAT140514_smProtein_2807:2989 |
Length | 61 |
Molecular weight | 6609.663 |
Aromaticity | 0.05 |
Instability index | 66.62 |
Isoelectric point | 6.80255126953 |
Runs | 12 |
Runs residual | 0.0502659574468 |
Runs probability | 0.0457737148914 |
Amino acid sequence | MLLAEDRRILSGHPIHCNVCLFVCDRVSLCHPGWSVVLRSWLTAASTAQAQAILPPQTPE |
Secondary structure | LLLLLLLHHHLLLLEELLEEEEEELLEEELLLLLEEEHHHHHHHHHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooo |