NONHSAT140404
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140404 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1548 nt |
Genomic location |
chr16+:8807219..8809490 |
Exon number |
2 |
Exons |
8807219..8807722,8808447..8809490 |
Genome context |
|
Sequence |
000001 GATGTGTCTT ATCCTTCTGG CTTAAACCAA GCTGGGCTTA AAACATCTTT TAAAAAAAAT CTGTATTCTA TTTTTTTCTC 000080
000081 TCTGTTTATC GCTCTCCTTC TGCCTCTGTT AATCTTTGTT TCTGTGTAGT TGCATCCTGT TTCTGTCTGA AAACCCTTGT 000160 000161 CTTTCTGAAT CCATCTTTCA GTCTCTCACA TTCTGTCTTT CCCCTCCTCC TTCACCTTCC CTCCGTCCCT CTCCCTTGCG 000240 000241 CACTTGCCGG GTACCAGCTG AGTGCATCCT TTTCCCAAAC CTGCTCTGCT TCCAAGGGGC CCTTTTCTGT CTCCTCCACC 000320 000321 TGTCCCCATG TTTTGGGGAC TGCCTGGAAA TCCGGGACAC CCTCCTGAGG AGGGAGCTGG TGCCCAACGG CACCTCTTAG 000400 000401 GATGAACCCA GCCAGCTGCG TTCCTGGCCT CTGCAGAATG GCATACAGAA GGCATTTTAA GCAAGCGAGC TGAGCTCGCC 000480 000481 GCAGGACTCC GACTACCAGG CACCGGCAAG ATGTGGGAAT CCTGAAAGGT TGGCGCTGAA GATCCTGCAG TTGGTGTGTG 000560 000561 CAAGCTGGCA GCCAGGCCGC TGCCGGAGGA AGGGGGTCCT CTGTGCTTTG CATGTCCCTG GGTATTTGGG AAACTTGGCA 000640 000641 GCCGGTTGCT CTAAGTGAAC CCTGACTCTG GAGTAGGCAC TGGGCACCCT GGCGGAGAGG ACAGAGCCGG AGACAAGGAC 000720 000721 TGGCCTCAGG GAGTTTCCAG TTCAAATAGG AACAGACCCG ATCACACGCG ATACGCTCAC CCTCAGACAC ATTGCTGCTG 000800 000801 CCTGCATTTC CTCCGGGCTG CCATCCCCCT TCCCCTACCC TGGCCTCTGT CTGCCACGAC TGCCCTTGTC TACCTGCCAA 000880 000881 GCTCTAATTA TCGTTAAACA TCCCGTCACT GCTTCCCGGA AATCTTTAAC TTCCACCCAA GAACAGCTAA CACTATACGC 000960 000961 CCTCCTCTAC CTGCAGAAAT CACTTGGACC CTCTGACATC ACATGTCCAA CCGACCTCTT TCTCCACATT TGCCCGTGAG 001040 001041 CTGCACTTCA TTTTGCAAGG ACATAAAGAA GACTATTCAC GCAACTACAt gcaaaatgac tggctgggat tcctaaaacg 001120 001121 ccaatgtctt ttaaaaggca aaagggctga gaaatggttc caggttaaaa gagattaaag agccatgagc ccaaatgcaa 001200 001201 tgtttgatcc taggatgaag cctggatcag gggaacagaa aacacttgtg ggctgggctc agtggctcat acctgtaatc 001280 001281 ccagtgcttt gggagtccga gggaggagga tcacttgaag tcaagagtta gagactagcc tcaggaatat agggagaccc 001360 001361 catctctaca aaaaataaat ataaaaataa actaaccaga catagtggtg tgtgcctgtg atcccagcta ctcaggaggc 001440 001441 tgaggcaaga ggatcacctg agcccaagag ttcgaggctg cagtgagcca tgagccatga tcatgccact gcactccagc 001520 001521 ctaggtgata gagcgagacc ctgtctct |
Predicted Small Protein
Name | NONHSAT140404_smProtein_1184:1330 |
Length | 49 |
Molecular weight | 5242.0134 |
Aromaticity | 0.0833333333333 |
Instability index | 54.5375 |
Isoelectric point | 5.00250244141 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0319338946791 |
Amino acid sequence | MSPNAMFDPRMKPGSGEQKTLVGWAQWLIPVIPVLWESEGGGSLEVKS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEEHHHEEELLEEEEEELLLLLEEEEEL |
PRMN | - |
PiMo | - |