NONHSAT139681
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139681 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1505 nt |
Genomic location |
chrY+:24476599..24478647 |
Exon number |
2 |
Exons |
24476599..24477171,24477716..24478647 |
Genome context |
|
Sequence |
000001 TGAGACCACT ACAGTGGTCA TGCCTAATAA TTACGTATTT TTGTAAGTGC TGGATGTGTT TTACCCACCG TAATAGCAGG 000080
000081 TACAGACTTT CAAGCTTGAA ACCTGTATGT CATAGCTCTG AACATTTGGT TATATGTTGA AATACCTCTA AGCATAAATT 000160 000161 GATTTTTAAA TGAGAGATAT AAATAAATAC AATAAATGAG AAAAACTCAT AAATACCTGG ATGAGATGCT TATAAAGAGG 000240 000241 TCAGCCTTAA AAATGTCATG AGGTCTAATG TGCCACTCTT CTACCATTTC TGTGGATATT ACTTGGACAG GAGGACAAGG 000320 000321 ACTCAGGGGT CTGCTTGTCA GTCTCTGCAC CTTGAAACAG TGGCTGGGGC ACCAGGAGTA ACACTTCCAG CCAACACTAA 000400 000401 GTGGTGAGGA CAAGGAGTCC ATCTGGCTTA AGGAGGGTGT GAACATAATG TGACCTGGAG GAGAAGTACA CCTGGTAGGG 000480 000481 CGACCAGGAT CAAGGTCTCT GGCACACATT GAAATCCCCC ATGCCCAGGT GTGGTGGAGT GAATCCCTCA GCTGGTGCTG 000560 000561 GGCTTCCAGG TGTGCACCCT GGAGAGGATG CACAGGGCAA AGCTTTTGTG TCCACACATG CAGTACTGGA ACTGGGTGTC 000640 000641 ACTGGCCTAT TAGGCCGCTG CTCACCAGGC ATTCTCCTGA GCTCCCACCT GGCTAAGTGA TAAGTGTCCC ATCTACCTGA 000720 000721 CCCCGCGGCC TGGGTTTCTC CTCCACCTAC CGACCCGTGC CCTCTTGGGG AGAATGCCAA CTTCCCTGGA GACTCAGGCC 000800 000801 TTGCTGGGCC CACATGCTGT CCTCCTGTCT CATGGGCTGG AAACTCTCTG GTGCACAGGG ATTCCCAGAC AGTGCATCCC 000880 000881 AAAGCCCCTC CGGTTCCATT GCTTCTTCCC TGAATGTACC GACTGAACAC ACAGGAAGAC AAAGACAGCT GCTAGGTTTC 000960 000961 ATTTCCCTCC AGATGTCATT TGAGGTCCAT GACATCTTCT CTAGGTAGCT CGCGCCAACC ACCCTTTTCC TCCTACCTCT 001040 001041 GCCATGTGTG AGAGCAATGA GGACTCTTCA CGTCTCCCTA GGGCTCAGGC TTCATGGGTC CTGAAGTTGG ATTGCCAAAC 001120 001121 CCGGCTGACC CCTGCTTGGC AGCTCAAGAG CTGAGTTTGA GTCATACCTG TGGGTGGGAA TGTGGGTCCC CTCCCCAAAC 001200 001201 CAAGGTACAC AAAGGTACAC AGGCACAGGT GTGCACACAC ATGCACCAGC TCAAACACGC AGGCTGGAAC GTGCCCACAC 001280 001281 TCACTCTGGT AGGAGGGAAA CTGGGTGTCT ACACCAATAC TCAGGTAGGC CTTAATGCTC AGCCACATTC TCTCGCTAGA 001360 001361 CACACACAGA AGGTCCCCTG CCATCTGCAG TGGGATTTAT TTTTACTTTT ATACTTTTTT AACTTACCAA AGTATGTTGC 001440 001441 ATTATTTCCC CCATGATGAA AAAGACTTTG ATACAAGTAA GGAGGAAGGG GACTTTTTAT AATAA |
Predicted Small Protein
Name | NONHSAT139681_smProtein_1334:1501 |
Length | 56 |
Molecular weight | 6615.3491 |
Aromaticity | 0.2 |
Instability index | 81.6585454545 |
Isoelectric point | 5.27947998047 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.0213124889595 |
Amino acid sequence | MLSHILSLDTHRRSPAICSGIYFYFYTFLTYQSMLHYFPHDEKDFDTSKEEGDFL |
Secondary structure | LLEEEELLLLLLLLLLEELLEEEEHHHHHHHHHHHHLLLLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |