NONHSAT137877
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137877 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2082 nt |
Genomic location |
chrX+:97828799..98121798 |
Exon number |
7 |
Exons |
97828799..97828930,97833984..97834072,97899526..97899572,97986529..97986575,98037898..98038327,98119609..98120576,98121430..98121798 |
Genome context |
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Sequence |
000001 CGCGATCTCG GCTCACTGCA AGCTCCGCCT CCCGGGTTCA CGCCATCTTG CCACTAAACC TGATTTACCA ACATAACCTG 000080
000081 TTTCTGGCCA TGCTGTGAAT CTGCATTCTT TACTGTGTCC TTGGGATACT AGGAGGAACC AGAGGAGCAG ATCCTGCTAG 000160 000161 GAGGCTAAGC ATGAAGAAGG AATTCAAAGA AACCTTGTGG AGAACGAAGA CACAGCAGGG AGTCTCTGAT CAAGTGCCAC 000240 000241 ATCTTTAGAG AAGCTTTTCC AAACAACCGA TTATGAAGTA CACATTAACA ATGAAGCCTC TTTTCAAGTA AAGAAACTGG 000320 000321 TGAAGTCTAT TTATTTAACC AGTTATTCAT TGTATTCTTT AGTTAAGTCA CACTTTTCTT CATGTCTCAT TTTAATTCCA 000400 000401 TATTGCTTTT GAAGTTTTTG TGTCTTTAAA TCACAAACGA GGCCGGGCGC AGTGGCTCAC ACCTGTAATC CCAGCACTTT 000480 000481 GGGAGGCCGA GGCAGGCGGA TCACGAGGTC AGGAGATCGA GACCATCCTG GCTAACACAG TGAAACTCCA TCTCTACTAA 000560 000561 AAAAATACAA AAAATTCACT GGGCGTGGTG GCGGGCGCCT ACAGTCAGTC CCAGCTACTC GGGAGGCTGA GGCAGCAGAA 000640 000641 TGGCGTGAAC CCGGGAGGCG GAGCTTGCAG TGAGCTGAGA TCACGCCATT GCACTCCAGC CTGGCGACAG AGCAAGACTC 000720 000721 TGTCTCAAAA AAAAAAAAAA AAAAAGCCTT CAAGCTCCAG ATAATCCTCA GTGAGGTATA CTGTCCGCTC AATATCCAAG 000800 000801 AGTCACCCTT CTACAAGGGA CCTCTAGACT GCCCATAAGT GAGACATGAC AGAGGTAAAG TCATGCTCCT GTCTCCCTTG 000880 000881 GACCTGGCTG GAAACTGCAT TCATCAACCC ATGGAACCAC CCCCCTGCCA TGAAAGCTAG CAAGAGGCCA AGACCCACAG 000960 000961 AACAACCACC ATCATCCCTC TGTCAGCAGG AAGCGGTTAC AAAAGACTAA CCTTTGCCCA TTTTCCCCAA AGAATTGGGG 001040 001041 TCTTGGAATC TTGAGGGAGG AAATGTTACA GTAGGTAGCT AGTCAGACAT GAGCAGAGCA GAAGAGGGCT TACACACACA 001120 001121 CACACACACA CACACACACA CACCCCACAC ACAAAGAATC CTGGGCAACC ATCAGGCGAT TGTAAGGTGG TTGTTAACTG 001200 001201 TGTCTCTAAA ATAACGATTG GTCACAACCA GTGCAATGGA AAGGCAGTCT CTCAATAAAC AGAAACACCT GGAGCTGATG 001280 001281 ATCAGCAGCT TCCTGATCAG GTCTCAGAAG TTTGGCAAGC TGGCCTACAC ATGCGCACTA AGAGGCAAAA TGGCACAGTT 001360 001361 TAACTGGTAT ATGACTTCCA ATGGACATTC AGCATGTAAG GGAAAAATGC CTCAAGTAAG CATGCATACA ACTCCACTAA 001440 001441 ACACACTGTG CATGCTCCCC TCTCAAGTGC TGGCAGGCCA GTGCACATGG GGACAGCCCA CCCCAAAGAA AGTCTCAAGG 001520 001521 GTGTAGGGAT GCAAGACCCC GGGAATATGC CAATGTATTA AACCCTAAGT CAAAAGGTCA AATCATGCAC TTGTCTTTCA 001600 001601 AGTCACCCAC TTGACCCTCT TCCAAGTGTA CTTTCCTTCC TTTTGTTACT ACTCTAAAGC TTTTTAATAA ATTTTCACTT 001680 001681 TTTGAATTCT TGTCTGCAAC TTAGACTAAC CTTAATGAAA GGGGTTTCCC CCTATAAAAC CATCAGATCT CATAAGACTT 001760 001761 ATTCACTACC TCGAGAACAG TATGGGGGAA ACTACCCCCA TCATTCAATT ATCTCCCACT GGGCCCCTCC ACAACATGTG 001840 001841 GAAATTATGA GAGCTACAAT TCAAGATGAG ATTTGGTGGG GACACAGCCA ATCATATTAG TAAGAATATG CTTACTTCTG 001920 001921 TAAAAAGCTG CCAAACTCTC TTCTAAATTG GCTGTAACTG TTTGCATTTT CATTAGTAAT GAATGAGAGT TTCTGTTGTT 002000 002001 CCACATCCTC TCCAGCATTT GGTGTAAGCA TTTAGAATTT TAGACATTCT ACTAGGTGTA TCATGGTATC TCCTCGTTGT 002080 002081 TT |
Predicted Small Protein
Name | NONHSAT137877_smProtein_1235:1525 |
Length | 97 |
Molecular weight | 10847.7414 |
Aromaticity | 0.0729166666667 |
Instability index | 61.1302083333 |
Isoelectric point | 10.1165161133 |
Runs | 13 |
Runs residual | 0.00118127147766 |
Runs probability | 0.0406968054027 |
Amino acid sequence | MERQSLNKQKHLELMISSFLIRSQKFGKLAYTCALRGKMAQFNWYMTSNGHSACKGKMPQ VSMHTTPLNTLCMLPSQVLAGQCTWGQPTPKKVSRV |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHEEEELLLLLLLLLLLLLE EEELLLLHHHHEELLHHHHLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |