NONHSAT137698
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137698 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2363 nt |
Genomic location |
chrX+:77166238..77220387 |
Exon number |
2 |
Exons |
77166238..77166332,77218120..77220387 |
Genome context |
|
Sequence |
000001 GATTGTGTGA GCTTTGTTGG AGCCTGCGTA CGTGGATTTA TCGCTGCCAC GGTCTGCGTA GCTCCAGAGG TTTAACCATA 000080
000081 GGATAGAGAA ACCAGACCCT TCTTCAGCAT CTTCCCTGGG CATTGCTGTG AGTTTAGGCC GGCCCGTTTT GAGCAGGAGC 000160 000161 AGCAGCGGAA CAGTAGACCT GCTGGAGGAA GTGGGGCTGC AGATCAGAGA CACAGCATTT TCGTCAACCA AACTTCTTGA 000240 000241 AGCCATATCT ACAGTATCAG CTCAAGTGGA AGAGCTTGCC GTCAAATGTA CGGAAAATGC ACGTTTCCTT AAAACATGAC 000320 000321 GGGACCTCTT GAAAGAATGC TGTGATTCTT GGAAACCTGA CAATTGATTT GGCATACTTA GCTCTTTGAT AGTGACTGTG 000400 000401 TAATAATTCA TACTTCCTCA TATATGATCA TTTCACATGT GCCACATATA TAGGATAATA TCTAGCAGTT CTCTATATCT 000480 000481 TCAGAATGAA GTTTTTCTTG GTTTTCTTGA CCTTTGTAAA AGCAGAATAC TGATTCTATT TTTGATGTTG ATCAGTACTT 000560 000561 GTTTATTCTT ACACTTTCTG CCCTTCAAAC TTTCATAAAA TCCTTTACAA AATTTAATTT TATCAGTAGA TAGTTAATAT 000640 000641 TAATTGTGCC ACAGTGCTAC CAGTAGCAAA CTAAGTGGAC CATTATTTGT TTTGCAGTAA GATGCCAAGC ATGGCAGAAT 000720 000721 TAGAAGTTGA GCTTCATCTT ATGGACCAAG GGAGATAACT TTAAGGTTCC agctccatta ggctgagttc tctaggcaaa 000800 000801 tgattgtctt acttacttcg atatccccag cacctaaaac agtgtcacat agcattcact aaatgtttat tgaaAAGAAG 000880 000881 AGTTGATTAA CATAATACAA AGCTATTTTT TCTTCCTGTA TTTAGCAGGA AGACTATAAT TGTTTCTCTA AAAATGTATG 000960 000961 AATCAGGACT TTGTTGACTT GAAGGAAAAT GTTATCTTTT TCACAGAGAT TTTAACTTTG ATGATAGCTT TTAAAAACAT 001040 001041 GATAAATACT TTTGTCCTCA AATGATTATT TTAAAAAGTC tttttttttt gagacagagt ctcattctgt ctcccaggct 001120 001121 ggagtgcagt ggtgcgatct tggctcactg caatctctgc ctcctgggtt caagtgattc tcctgcctca gcctccctag 001200 001201 tagctgggat tacaggcgtg tgccaccata cccggctaat tttttgtatt tttagtagag acaaggtttc accatattga 001280 001281 ccaggctggt ctcgaactcc tgacctcaag tgatccaccc gcctcggcct cccaaagtgc tgggattaca ggcgtgagcc 001360 001361 actgcaccca gcTAAGAAGT CTTTATTTCA GAAAATGAAA GACTGTCTAG AAAGAACGAA TTTTTTTTCC TATTTATTTC 001440 001441 TATGGTTACT GCTTTTACAC TTAATATTTT TTGTTTTCGG TATTTTTATA TGTTTGATTG CTGTCTTTAA AGTGCCTTAT 001520 001521 CAGATTTATG GCTCTGTACT ATGAATTTTG GAGCTTTACA AGTTATTTAC ATAACTCTAA GTTACTTTGC TTCCAATACA 001600 001601 TCAAATTTAA ATAACATGAT TGTTTTTATA TTATTTGACC TTAGTGACAA TGTCCTATTT TATTTGTTCT GTATCTTATG 001680 001681 TCGCTTTTTG GTAGTTTGTA TTATGTGTGA ATGATTAAGC CAACTAATTC TGTACCATAT ATAACTTCTG GATATCTTTG 001760 001761 ATATGACATC TTAATTCTTT GTAGATATGG TGATGTGTAC AGAATGATAT TCTGAAGCTC CACAATGGTG CATTGAAAGG 001840 001841 CTGCAGATGG ATGGCCAAAG AATAGTTTTG TTTAGCATAT TAGGTCTAGT TCTGGACttt tttttttata ctttaagttc 001920 001921 tggggtacat gtgcagaaca tgcagttttg ttacataggt atacacgtgc catggtggtt tgctgcaccc atcaacccat 002000 002001 cacctacatt aggtatttct cctaatgtta tccctcgcct aatccccacc ccccgacagg ccccagtgtg tgatgcttcc 002080 002081 ctccttatgt ctgtgtgttc tcattgttca aatcccactt acgagtgaga acatgcagtg tttggttttc tgttcatgtg 002160 002161 atagtttgct gagaattatt gtttccagct tcatccatgt ccctgcaaag gacatgaact catccttttt tatggctgcg 002240 002241 gagtattcca tggtgtatat gtgccacatt ttctttatcc agtctgttat tgatggacat ttaggttggt tccaagtctt 002320 002321 tgctattgtg aatagtgcct caataaacat acatgtgcat gtg |
Predicted Small Protein
Name | NONHSAT137698_smProtein_1061:1279 |
Length | 73 |
Molecular weight | 7793.2059 |
Aromaticity | 0.0694444444444 |
Instability index | 61.3041666667 |
Isoelectric point | 8.76983642578 |
Runs | 11 |
Runs residual | 0.0118613138686 |
Runs probability | 0.0669733905027 |
Amino acid sequence | MIILKSLFFLRQSLILSPRLECSGAILAHCNLCLLGSSDSPASASLVAGITGVCHHTRLI FCIFSRDKVSPY |
Secondary structure | LLHHHHHHHHHHHHLLLLLLLLLHHHHHHHLLLLLLLLLLHHHHHHHHHHEEHHHLLEEE EEEEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHH HLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTT Tiiiiiiiiiii |