NONHSAT137610

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT137610

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3148 nt

Genomic location

chrX-:73429811..73433495

Exon number

1

Exons

73429811..73433495

Genome context

Sequence
000001 ATAGTTGGCT GTATTTCTGG GTTCTCTATT CTGTTCCATT GGTCTATGTG TCTACTTTTA TACCAGTACC ACGGGTACAC 000080
000081 TAAAATCTCA GACTTCACCA CTATACAATT CATCCATGTA ACCAAAAACC ACTTTTACCC CAAAAGTTAC TGAAATAAGT 000160
000161 ATTTTTAAAG ATTTTAAAAA ATAGAGAGGA AAGAGGAGGC TATGAAATTC CATAATGGAG TTACAGATGC TTGACATAAT 000240
000241 TTAGTGGATA TTGGATTTAG AAGCTTACAT GAATGAGGCA AACCTGAGAT CTGTGATATT TGTAAATGAA GATAGGAGTG 000320
000321 AACTTACTGC CCTTAGGAGT GGAGGGAGGG AAGGAAGGGA GAAAATGAGA GATGCCATAA AATCTATTAC TTCAATGGAT 000400
000401 TTGAAGTAAT CCTTTGAAGC AGGCAGTGAG ACTTACTTCA TAAATCCATA CCTTTTTAAT GTGGATTGGA GAGAAGTTGT 000480
000481 TGCGCTGTAA TACCTCTGTT GCTACTGTGA GAGTCATTGC CAGCCACTAT TCTCATGTCA AGCTGCCCTT GAGGAGGTTT 000560
000561 CTCTTGACCC AATTTAGAAA CAACCCAAAA CAAGGTTTGT AACTTAGAGG AATTCTTTGA TTCTGTGACA AGGGGTCTGT 000640
000641 GACCCTCTTA AAGGGATCAA GTACACAGGA GATAGTACAA GTAGTACTAA ATAGCCAGCT TAAAAAATTG GATAGGTGAG 000720
000721 ATGAGACAGG AACAGTGGAC AGAATGGCTC TAGGCATCCC CAAACACCAC ATCTGGGATA AGGAAATAGT ACAATGGAAA 000800
000801 GTCTATCCTT GGACCTACTA TTTGTCATTC CCCATGGCAT GATGGAATAT CTAAAATAAA AAGAGTTGCT TTGGAGAAGG 000880
000881 ATTGCAAAAT ATTATTTCAT AGAAGAGATT TAGAAGAGGG GAAACTCCCA ATTACATAAG GTGGGCATTA TAGCTTCTCA 000960
000961 AAACATTGGT TCCCTATATG GGTCATGAAG ATTGATCCCA GTATCAGCCT ATGGCTTACT AGGCCAGTTT AACTGAAAGA 001040
001041 TTTAATGAGC TTGGAAGGAT GCTGCCACCT GCACTCTCAC TTTGGCGGGT GTTTATCACC AGTGAGTGCG GTCCCTAAAG 001120
001121 GAGCAAAAGG ACAATAAGCA CCCAGTGGAC AACAGTGTGG CATTTTGAGT GAAGATAGCA ACTGAAAAGG TCATCGGCTT 001200
001201 GGCTAGATTG GGCTGGGCTT GTTTTTTAAA AATAAAAAAA AAGTTTTCCT TCATGATAAA AGTAACAGGT GATCATTGTT 001280
001281 AAAAAATAAA GTATGAATTA AAAAGTAAAT AATATGTATA ATTTTATAAG CCAGAAAACT AATTTGTAAT ATTCAGGTGT 001360
001361 ATGTCCTTTC ATTCTTTTTA AAAATTATGT ATATAACACA GTTTTATAAC AAAATTGACA TCATATTGTA TATATCATTT 001440
001441 TATTATCTAA TTTTTTCATT TGAAAATTCA CAAGCATATT TCCATGTTAT TGTTCTTTGA AAAATACAAT ATTAAGTGCT 001520
001521 CCATAATATC TTATGGATTT AACAAAGTTT ATTTAGATGA TGTCATGTTA TTGGACATTT TGATTATTAC CAAGTTTGCG 001600
001601 TATAAAATTT AAATGTAATG AACATCATTG TACATTAACC TTTATGCACA TCTGGAATTA TTTCTTTAGA ATAAGGTTCC 001680
001681 AGAATTAAAA TTATTTAGTT TGGATGATGA GAGCATTTAT TAGAGCATCT GACAGGTGAT GCTGAATTTT CCTCAATACA 001760
001761 GTTGTGCAAA TTGCATTCCC ACCAGTAGTG TATAAATGTG AATATCCCTC CATATATTCA TCAAAACATG GCCTTTCTAA 001840
001841 TTTTGTAAAT CTCTGCTAAT TTAATAGGTA AAAATATACC TTTGTTGCTT TAAAATTTTT ATTTCTAATT TACACACAGT 001920
001921 AAAATTCACT CTTTTTAGTA TATGGTTCTA TGGGTTTTGA CAAATGCACA GTCATGTATC TTCTACACTA GTACCATACA 002000
002001 GAGAAGTTCT GTCACTTTAA TAATTTCTCT TGGTGGCTCT TTTTGTATTC AACCCCTTAC CCCATACTCA ATCTCTGGAA 002080
002081 ACCATCAATT TATTCTTCAT CCCTATGGTT TTGCCTTTTC CAGAAGGTCA TATAAGTGGA ATCAAGCAAT ATGTAGCCCT 002160
002161 TTTGGTCTGG CTTCTTTCAC TTAGTAAAAC GCAGTCAAGA TTCTCCCATG TTTTGTGGAT AATTATTTCA TTCCTTTTTA 002240
002241 TCACTGAGTA GTACTTCATT GTGTGGATGT ACCACAGTTT TATTATCCAT TCACTAACTG ATGAACTTGT AAGATGTTTC 002320
002321 TAGTTTTGGT GAATATGAAC AAATTTGCTA TAAACTTTCA GGTATAAGTT TTGTGTGATA AATGCTCATT TTTATAGGGT 002400
002401 AAATGCTTTG GAGTGGGAAT GAGTGCCAGA CTGTTTTCTA AAGTTTCCCT AGCATTTTGC ATTCCAATTA CAAATATGTG 002480
002481 AGAGTTCCAG TAGCTTTGTA TCTTTACCAG TATTTAGTAA TTTTGTATTA TACATATATA TGTATGTAAA TATATATATA 002560
002561 TATTCATTTA AATTTTAATC ATTGTTAGAA TTTGTAATTC CCCAATGATA TATGGTATTA TCTTTTATTT GTTTATAATT 002640
002641 GACACATAAT TATTTATGGG ATACATTGTG ATGTTTCAGT ACATGTGTAC ATTGTATAAT GATCAAATCA GGATATCACC 002720
002721 TCAAACCTTA TGATGATCTT ACAGTTAAAG ATGATATATT CTTGCAAAGT GTCTGTTCAG ATCTTTTGCT CCCCTTTTTT 002800
002801 ATTGGATTAT TCCTTTTCTT ACTGTTTTTA TATGTTTTTT AATATATTGA TACAAATCCT TTGTCAGATA CATTATTTGG 002880
002881 AAATAGATTT TCCTAGTCTG TGACTTGTCT TTTCATTCTT TGAACACTGA CTTTTTTAGA GCAAAAATTT TAATTTTGAT 002960
002961 ACAATTCACT TTATCAATTT TTTTACTTTT GATGTGCAAT GTAAGAACAC TTGTTTAACC CAATGTCATG AAGATTATAT 003040
003041 ATTATTTTCA TCCAGGAATT TTATAGTTTT AAGTTTTACA TTTATATTTA TGATACTTTT TGAATAAAGG TTTGTATAAA 003120
003121 GTTTAAAAAA AAAAAAAAAA AAAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT137610_smProtein_2729:2902
Length 58
Molecular weight 6906.3234
Aromaticity 0.210526315789
Instability index 83.2247368421
Isoelectric point 5.36138916016
Runs 10
Runs residual 0.0214912280702
Runs probability 0.035532591415
Amino acid sequence MMILQLKMIYSCKVSVQIFCSPFLLDYSFSYCFYMFFNILIQILCQIHYLEIDFPSL
Secondary structure LLHHHHHHHHLLLEEEEEEELLHHHLLLHHHHHHHHHHHHHHHHHHHHHHEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTToooooooooooo