NONHSAT134521
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134521 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3798 nt |
Genomic location |
chr9+:123605320..123616651 |
Exon number |
4 |
Exons |
123605320..123605717,123607271..123607474,123609572..123609631,123613516..123616651 |
Genome context |
|
Sequence |
000001 GTTAGGGCCG TGTCAACTGT AGCCAGTGGT TGCGGCTCCC TCAGTCTGGC GTCATCTAGG TCGCTGCTCA GGGAAATGCG 000080
000081 GAGGCCAGTA GGCTTACGTG TTTACCGCGT AGGGCAAAGC CTTGCCAAAT TCCCGGCCAG CGGAGCGGCG AGGGTGGGGA 000160 000161 CTCACGGGAA GTTAAACAGC CTCGTCGGCG TCCTCGAGGC TCCAAAACCA GGCTCTAGGC GGGGACGACT GCAGCCGTTA 000240 000241 TGGAGGCCAC CGCGGCTACG GCCGCGGCTG AGGCCTCCCC AGGTGGAGCG GTGGCCTGGA GGGGAATCTT GATCCTGGGC 000320 000321 CAGCCACCTG TCAAGAGGAG GCGGAGCGTC ATGCCTCTGG AAGACTGGAT GAATATTCTC CAGGAGCCTG ACGAAGGCGA 000400 000401 AGAAGTCTTT GCAGAGGAAA TTGAATGCTG TCTGATGCTA CAATTCATAT GGATCCTTTC CTGGATTGAA GCCTGACTTT 000480 000481 TAAAAAAGGT TTCAATAAAT TGCTTATACC TATGAAGAGA TGCAAAAGAA CCTTCAAAAT AAAGCAAAGG ACTTGAAGAA 000560 000561 AGAGAAGGAA GACATGAAGA AGAGGATGTC ATTTAGGTGA AGGGCCATGC TGGATAAGGA GCTGGCTGCC TCTGTGAACA 000640 000641 TCCTACTCAA GGCATCTTCA CTGCTGTACA TCCTTTTGAA ATCCCAGAGA TCTTCAGTCT CCCTGTGGAT TAAGGAGATG 000720 000721 TGCAGTATTT AAAGTGGCTT CAGGAAGGCA TGGAAGAGGA CTGAGTGGGG AAAGCTTTTT GTGCATGCTG CTGGCTACCT 000800 000801 CCAGCGGCTG CCTCCAGCCT CCATCAGCTG CACTCTGGGG AAGAGGAGGC TGCCTTCTAC CTCCCAGCAT CTCTGGATTT 000880 000881 CATGTTCCTG TCAGCACAGA GGAGCTAAAT GGCCTGTAGA GGCTGAAGGT CTGAGGCTCC TAAAGCTGGA AGAAAAGGCT 000960 000961 GGGCCAGTCA GGCCAAGCAA GAACACAGTG TAACTTGTCT CTGAGTGCTT CATGGTTAAG GGGGCTAAGC AGGCACAAGG 001040 001041 GCATGAGGAT GGTTATATGT ACAGACTGAG GGGAAGAAGC AGTGAAGATG AGACTTGCCA TCTTCTTGAG TCAGTAGGCC 001120 001121 TGCCTCAGGT GCCTAGGATG TAATTGCTCT GCTGCTTCTC ATGGGGAGGA GTGGCCCTCA TGACCTTGTT TACCTGGAAG 001200 001201 AGTGTGGGAT GAATGCCTCC TCCTATGGGG ACTCGCAAGT GCTTTAGCAA AAGGATAAAT TGCTAATTGT GGCATTTCGT 001280 001281 GGATCAGCAG GATTATTTCT CCTTGCTAAA GAGGATTTTG TTGGTCCTGA ATTCTGAGGA GGTGGGACTA GGAATGGGCT 001360 001361 CCATGAGCCT GTGTATGACT CAGGGAATAT TAGGACTTTG GCACAGCCTC ATGGGTTGGG AGTAAGTCTT GGCTCTTCCC 001440 001441 TAGCCTGAAT GACAGACATC AGATCATTCT GGTGCTTTGT CCATGAAGAT GTAGATTCTG AGCCCACCCA ACTAATCTTT 001520 001521 TCACTTGAGC ACAGAAACAG CCCCGGGAAT CGGACAGACC CGTGTCTTTC AGGTTTGCTT CACAGAGCCC CAGGGGTTGA 001600 001601 CAATAGGTGC CTTGGAGACT GCCTGCATGG GGATTTTTAA AAAGCTTTCT TTGTTAAAGG TTTGTAAACC ACTCCTCTGA 001680 001681 GCCTGTTTTC ATTTTATAGA TTATTCAGGG AACTGAACTG CACAGAGATC CAGAAAGTGG GTAGTGCAGG CTGTAGTGCT 001760 001761 GATAACTACT GTACTACTTG GATCTTTGTG CTCCCAAATA CCAAATGGAA GAGGATCTCT GAGAGTCCTT TGCAAAGATC 001840 001841 TTGTAGGGAC TTTAGGCTGG GGCCTTCGGA AAATTCCAGA GGATTCCAAT GGAGATTTTG AGGGACTGAC TCAGAAGAAC 001920 001921 AAAGAGAATG ATAATGGTGA TGTCCCTGCT TTTTACAACA GATCATGTTC TGATATATAT GCAAATCTGT GTAAAGTAAA 002000 002001 CCCTACCTAA AATGTACTGG GGACCCAAGA TGGACTGCCT GTATTGCTTC CAGGATAAAG TCCAATTTCT AGCTCTGGTT 002080 002081 TTTATAACCT TGCTTCAGCT CACCTTTTCC GTCATCATCC CCTCCATCTC CTCTCCCACG CTGGGAAATG GATGGCTGCA 002160 002161 CTATACTGTG TGATGTTATT GCTATGTTCA TGCCATCCCC TCTGCCTGGA ATGCCCTTCT GCATGAATGC CTGTGAAATG 002240 002241 TTGTTGCTCC TTTGTATGGC CTGGCTTCCG TGGTTGGCAG GAATCTCTTC TTTCGTGGTA TTCCTGTCAT CTTTGTGCAT 002320 002321 CACAGTCAGC TTTGTATTCC TAGCTTGTAA GCTACTTGAG GATAGGGGCA TGTCTGAATC TATTTAATCT CTTGCACCTG 002400 002401 TTTGGCAAAT TGATGTTTTA AGTATTTAAA TAACTAAAGC TCTCTCTACA GTACATACTC ACTTTTGATT TATGAATTGG 002480 002481 CAAAATTCAA CTTTTTTCCT TGAATATTCT TAAAGTGAGA TGAATTCCAA AGGAGAGTGT TCTGTGTGTG GCCTTCATTG 002560 002561 AGTGGTTTTC TGTTACCAGA AAGCTCTTGG TGGCCTTCCT CTTCCCTGGT GTCAAGGTTG ACTGTTATAG GAAATGGGAG 002640 002641 GGGAGAGGGC CGTTTCTGCC ACGCATTGTC CTAGGTTCTT AACATTATTT AATCCTTATA ATGCAATGTT ATCCTCATTT 002720 002721 TACAGATGAA ACCTGAGACC AAAGAACATG TAACACATAA AGTACATTGC AGAGTTAGGA TGTGAACCCA ACTCTGATTC 002800 002801 TAAACCTAAT GCTCTCACTC TTTCATTCAG AGGTTCAGTC AGTTCTTTGT AGGCTGTAGA TCCAGAGAAG CTGCCGTAGC 002880 002881 CAACAATGAA GTTGTTAGTT TTTAAAACAT CTATGTGGTA AGTTGGTCTG GCACTTAAAA ATGTATTGTT TCCCAGGCAC 002960 002961 GGTGGTTCAC ACCTGTAATC CCAGCATTTT GGGAGGCCGA GGCAGGCGGA TCATTAGGTC AAAAGATTGA GACCATCCTG 003040 003041 ACCAACATGG TGAAACCCCG TCTCTACTAA AAGTACAAAA ATTAGCTGGG TGTGGTGGCG CATGCCTCTA GTCCCAGCTA 003120 003121 CCTGGGAGGC TGAGGCAGGA GAATTGCTTG AACCCAGGAG GCAGAGGTTG CAGTGAGCCA AGATCATGCT ACTGCACTAC 003200 003201 AGCCTGGCAA CAAAGCGAGA CTCTGTCTAA AATATATATA TATATATATA TTGTTTACTA CTCACCACAG ATCTGCAGGA 003280 003281 GTTCACTGAT CTCTAGGATC TGCCTTAACT CCAACTTACA TGTTTTGGTC ACTATTACAA ACTGTCATCC CAGAATGATG 003360 003361 CTGCAGAGGC TAGGGCTAGG ACACAGACCA GTGTTTCCAT GTGGGAATTC CCTCCCAGTA TTTCTTAGGA AATGTATGTT 003440 003441 TTTTGAATCC ATAATCCCTA GAAAAATCAG TTGAGGAAAT GAGAAGTATT GTAATTATTC TGTGAATAGT AACACTTACC 003520 003521 ATTATGGAGA CATCACTAGT TTGAAAGAAT CCAACTTCAT CAAATATTAA CGTACCGAGT TGAAGGCTAC AAGAACTGAG 003600 003601 ACAGGAGCAT AGCAGAGAGA AACGGTCACC ATCTCATTAG CCCTATTTTT GGTTGTTGTG ATGCCATTAC ATCTGTATAT 003680 003681 CTGGCCATAT CAGCTGCTAA TGGTGAGTTC TTGCAAACAA AATGATTTGA TAAACAACCT ACCATACTTT ATACAAATCT 003760 003761 TATGGTGTTC CGAGAAATAA ACTTTGGAAG CAAAATAA |
Predicted Small Protein
Name | NONHSAT134521_smProtein_2147:2386 |
Length | 80 |
Molecular weight | 8676.5997 |
Aromaticity | 0.101265822785 |
Instability index | 82.5860759494 |
Isoelectric point | 4.01751708984 |
Runs | 9 |
Runs residual | 0.0263568579851 |
Runs probability | 0.0582543327641 |
Amino acid sequence | MDGCTILCDVIAMFMPSPLPGMPFCMNACEMLLLLCMAWLPWLAGISSFVVFLSSLCITV SFVFLACKLLEDRGMSESI |
Secondary structure | LLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLHHHEEHHHHHHHHH HHHHHHHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiiiiiii |