NONHSAT133450

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT133450

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2138 nt

Genomic location

chr9+:99631182..99634510

Exon number

2

Exons

99631182..99631344,99632536..99634510

Genome context

Sequence
000001 GCTTGAGTTG GGAAACCAGT TCTCCCACTT CATTAATAAT GATGTCGATG TTCCTGGCAG TGTTTATACC AAATGCTACT 000080
000081 TTGACCTTTG CGCCTTGGCA CACGACAGTA GCCTATATTT GCCATTTTGT CTTCTTGACA TAGAAAGAGC ATGGGAACTG 000160
000161 AAGGTTGTTT CAAGGTTGGA AGACAAAGAC TTCTATGGTA CTGCCAACAA AAGGAAAAGG TCTTTGAGTT CTGATGATTT 000240
000241 AATTGATCTT CAGTGCCTTA AGGCCATCCT CTCCTGAAGG AAGAAGTGAG GGGTTATATA ACATCTGAAC CCCTCATCAA 000320
000321 AAAAGACAGG AAAATATCAC CTTTCCTGCT GAAGAACTAG AAAAGTACTT TCAAAAGAAG AAACACCTAC AATTCAAGTT 000400
000401 AACTCAAGGA CAACTAGGAT TGCACTTCAT AGAAAAGAAT GGGACCTTGT CAATGCAACA ACACACTCTT ACACTCTTCT 000480
000481 GTCCCTTTTA ATGTAAAGAG AGTTATAAAA ACCACTCCAA AGTGAAGGCT CCTATGTGAG CTGATAGCAG TGAACTATGT 000560
000561 AAGGGTTTAA AACAATGGTT TAAATTTTTA GATTTTAAAG ATAACTTTTC TGTTTCTTTT ATATTTTTCT TTCCCCCAAT 000640
000641 ATTGCTGCAT ATGCATTTAG CATCATATTA CCATTAAAAC ATAGGACTCT TAACAACTCA TAAAGCCACT AGGAGCAGAT 000720
000721 GCAGCATTGT CAGGTACTGA AGGGGCTCTT CCTTCCTACT CTTAGAATCG AAGCTACTAG TTACTGGCAA TCATTTTAAG 000800
000801 CAAAAGCTTC TGGATAACAT TTGCCATTCA TATCCTCTGT AAGCACTTCT TATTAGCAGT TAGCATGTTT GGGGTCATAA 000880
000881 AAAGAGAAAA TATTGGTTAT TGATTATCTA CTTTTATTAG GGTCTGTGGT GTATTTCTTG TGAACTATAA TGGTTCTCAT 000960
000961 TTGCTGATAA ATTTTCTTAT TTTTTAAATA AAGGTATTAA AAGATGTTTT CATAGTGCCA AGCAACATGG TGATCCAGTG 001040
001041 GTAATAAAAA ATGATAAAAC ATGAGGTGTC CTGAAAGTTT CAGGACAGTT TTTAGCTTTA ACATAGTATG CTTGTGCCCT 001120
001121 CCAGAGCACT GAAGCATACA TATGCAGGCT ATAAACCTTT ACAAAATATA ATTTGAAATT TTAATTGTAT TTCTTCTTTT 001200
001201 TTTTTTTAAA TAGATGTTGT CTCAGTATGT TACCCAATGT ACAGTGCAAT GATTATTCAG AGGCACAGTC ATAGCATACC 001280
001281 ACAGCCTGGA AATCCTGGCC TCAAGCAATC CTCCCATGTC AGCCTACCAA GCAGCTGGGA CTATAGGTGT GTACCACCAC 001360
001361 CTCTGGCTTC ATTTTGCAGA ATTTGAATAT TAAGCATTTA ACTTTTTGTC TCATCAATAT CTGCTATCGT CAAGAAGGAC 001440
001441 TGAAACAAAA AATTAAAGGT TAATATTCAG GAGCTAGGCA TGCCTGTAGT CCCAGCTACT CATAAGGCTT AAATGGCAGG 001520
001521 ATCACTTGAG GCCTAGCATT GGAGGCTGCA GTGCGCTGTG ATTGTGCCTG GAAATAGCCA TTGCACTCCA GCCTTGGCAA 001600
001601 CATACTGAGA CCCTGTCACT CTAAAAAATG GCAAAACTAA ATAAAGGTAA AAGAAATATA ACAAACCTTT CAGTGATGCT 001680
001681 TTGTAAATAT TTGTAGCATT GATACTTCTA CAAGTATCAA AGCTTAAAAT TACACTAAGC CTTTTGGAAT TGTTGTATTT 001760
001761 TTATAAAGTG CCCTTTTCTC TTTTGAAGTA GTTCTTTGCA GGGCTTTCAT CTGCATTGAT CACCCAAAAT TATTTTCTCT 001840
001841 AGATGTGATA CAGAATAGGA TCAGTTTTAA TGCACATGTA ACAAATTTGA AGGAACTGGA CCTTAATAGT AGTAGATGAT 001920
001921 CTAATACATT TTATTATCCC GCATGTTAAC CTGGAGGCAG GTATCATATT TTATGTCCAT AAACCTTAGG AACCTTACCT 002000
002001 CCTAAAAAAA TTATCATTTA TGGAGTGCAG AGCTTAGAGA TTGAAGTATT GACTGCAGTT TTATTTTCAA AAGGTAAATG 002080
002081 CTACAATTTA TGTGGTTTTT ATTTCTCATG TTTACATTAA AAGAAAACCT AATAAACT
[back to top]

Predicted Small Protein

Name NONHSAT133450_smProtein_38:142
Length 35
Molecular weight 3922.6993
Aromaticity 0.205882352941
Instability index 40.6676470588
Isoelectric point 6.68389892578
Runs 6
Runs residual 0.00967982129561
Runs probability 0.0377877877879
Amino acid sequence MMSMFLAVFIPNATLTFAPWHTTVAYICHFVFLT
Secondary structure LLLHHHHHLLLLLLLLLLLLHHHHHHHHHHEELL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
PiMo ooooooooooooTTTTTTTTTTTTTTTTTTiiii