NONHSAT133442

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT133442

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

740 nt

Genomic location

chr9+:99489012..99489751

Exon number

1

Exons

99489012..99489751

Genome context

Sequence
000001 CTCAAGTGCA TTCGCAAGTG GAGCAGTGCT AAGCAATTTC AGAGCAAGAT TATAAAGTCC TGCCTAGATT GCCAGATCAC 000080
000081 ATCTAACTTT GTCATTCCAA GTGAGTCCTG GGTGGAGAAA GAAGAGAAGC AGAAACTCAT TCAGAAATAC AAGGAGGCAT 000160
000161 TGAGCAACAA GGCTTGCAGG TATTTTGATG AAGGACGTGG GAGCTGCCCA TTTGGAAGGA ATTGTTTTTA CAAGCATGCG 000240
000241 TACCCTGATG GCCTTACAGA GAAGCCACAG AGACAGAAAG TGGGAACATC AAGCAGAAAC TGGGTCCAAT GAAGGAACCA 000320
000321 CTTCTGAGAA CTCACTGAGG AAAGAGATAG CAGCAACCCT TTTGACAATG ATGAAGAGGT TGTCACCTCT TGAGGTGGGC 000400
000401 GAGATGTTGC TTATGCTTTT GGCTGCAGGT GGGGATGATG AACTGGCAGA CTCTGAAGAT GAGTGGGACT TGTTTCATGA 000480
000481 TGAGCTGGAA GATTTTTATG ATTTGGATCT ATAGCAACCT TGTGTGGCGT GTGAACTGGT CTGCTGACCC CAGACAGCAG 000560
000561 CTGTCCCCTG TGCTGGTGTG GCAGTGCCTG TGTTCTCTCC TAGGTAGGCC TATCAACTCC AGGTGTTGTA AAAATTTTTA 000640
000641 CCCAGGGCCT GTCTTCTCAA CCCTTCACCT TTCCCCGAGG AGTGTGTTAT TTTCCCTGTT GAAAACAGTT AAAACTTAAA 000720
000721 GTTAGTTTTT TGTAACACAA
[back to top]

Predicted Small Protein

Name NONHSAT133442_smProtein_434:718
Length 95
Molecular weight 11050.1585
Aromaticity 0.13829787234
Instability index 44.2107446809
Isoelectric point 9.98162841797
Runs 14
Runs residual 0.0201202590194
Runs probability 0.0409695409695
Amino acid sequence MMNWQTLKMSGTCFMMSWKIFMIWIYSNLVWRVNWSADPRQQLSPVLVWQCLCSLLGRPI
NSRCCKNFYPGPVFSTLHLSPRSVLFSLLKTVKT
Secondary structure LLLLEEELLLLEEEHHHHHHHHHHHHHLLEEEEEELLLLLLLLLHHHHHHHHHHHHLLLL
LLLLLLLLLLLLEEEEEELLLHHHHHHHHHHHLL
PRMN -
PiMo -