NONHSAT131203
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131203 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1412 nt |
Genomic location |
chr9+:39016966..39039591 |
Exon number |
7 |
Exons |
39016966..39017034,39026448..39026511,39026653..39026823,39028176..39028335,39028862..39028986,39038413..39038560,39038917..39039591 |
Genome context |
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Sequence |
000001 attgtccttc ttaatctgta taccttttct tttcttgtct tgtctgtttg cattagcttg gtctgctggC TTTGGAAACC 000080
000081 CAACTCACCA TTAAATTGCA GTGTCTTAAA TTGTACTCTT TGCATACTGA TTTCTTTTCG TGTTCGTTTT TGCCATCGAG 000160 000161 GAGATCAACA GGGGCCCGCT GCTCTTACTC AACATGTCTT TGGGGTATCA CGTCTACAAT GCCTGCAACA CTGATCAGAG 000240 000241 GACTTTGGAG GGCCCTCTGT TTTGGCTGTC AGGAGGGGCC GAGAACCTTC CCAATTATAC ATGTCCATTT GATCCTTTGC 000320 000321 CTAGTGATGA AGGACAGTTT CCATCTCTGT ATCAGATGGT CCCAAGGAAT CATCTTTGCC TCTTGGCATG GTGAAGCTGT 000400 000401 TGCAGCATTT TAGCTAGACC TGGTAGGGCT GCTTGTCTCA GATGACATAA AAGGTGGGCA TTTTGTTACC ACCTCCCAGT 000480 000481 GGGACTTTAT CACACATGGG GGAAGTTTCA TACTTAATCC ATTCCATGGG ACTCTCACTT TTTCAAAGCA GAACAGTGAG 000560 000561 ATGCCTGGCT TCCAGCATTT TGTTCAGACG ACTCCAATGA ATGTGCAAAA TGTCCAGACA ACCAGTATTC AGTGAGAGAG 000640 000641 ATCACTGCCT CACAGAGTTG TGACCTTCCT GGATTTTGAA GATGCACTGG GGACAGCACT GGCCAGCATA GCTCTCTGTT 000720 000721 TCTCTGTCCT CACTGCCATG GTTCTTATGA TCTTTGTGAA GCACATACAC ACACTCATAG TCAAGACTCT CAGCGACATC 000800 000801 TCTCTGTCTG TTTTCTTCTG CTCCTTGCTC TTCACTGGCT GTACAAACAC AGTCACTTGT ATCCTCTGAC AGACAACATT 000880 000881 TGGAATCATT TTTACTGTGG TTGTTTCAAC TGCGTTAGCT AAAACTATCA CTGTGCTTAT AGCCTGTAAG GCTACAGCAT 000960 000961 CAGAGAGAAA GCCAAAGTGG TTTTGGGGAC TGGGAGTATT TAGCACAGTT ATTTTCATCT GTTTCCTTAT CCAAGTAACT 001040 001041 CTCTGGAATT TGGCATGGGA TCAAAGAGTG CCATCAGGAC TCTCAATGAT GAGGTATTCT TTGCCTTCCA CTCTGTTCTG 001120 001121 GGATTCTTGA CCTTTTTGGC ACTGGGGAGC TTCATCTTGG CTTTCCTGGC CAGCAGCCTG CCTGACACCT TCAATGAAGC 001200 001201 CAAGTTCTTG ATGTTCAGCA TGCTGATGTT ATGTACTGTT TGAATTACCT TCCAAACTGT GTAACATAGC ACCAAAGGGA 001280 001281 AGGTCATGGT TGCCTTGGAA ATATTCTCCA CCTTGACTTC CAGTGCTGAG TGCTAGGCGG TATCTTTGCT CCCAGAGGCC 001360 001361 GTATTATTCT AATAAAACCA GATAAGAATA CTCTTGGAGA GTTAAGGGAA AA |
Predicted Small Protein
Name | NONHSAT131203_smProtein_218:412 |
Length | 65 |
Molecular weight | 7266.6323 |
Aromaticity | 0.125 |
Instability index | 50.1734375 |
Isoelectric point | 8.52667236328 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0385311782371 |
Amino acid sequence | MPATLIRGLWRALCFGCQEGPRTFPIIHVHLILCLVMKDSFHLCIRWSQGIIFASWHGEA VAAF |
Secondary structure | LLHHHHHHHHHHHHHLLLLLLLLEEEEEEEEEEEEELLLLHHHEEELLLLLEEELLLHHH HHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooo oooo |